Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1644 ATGGGTTGTTGGATGTCAATTGATAGTGTTATTTTGGGTGACACTCTAATTCGAGGTCGAATGTTCAGTTCGAGCATGGATTCTGCGAGGGACACAGGTAGTGTTGCGGGGACGGTGCTAATTCCGATGCGCTTTGTGTGGCCATATGGGGGAAGAAGTGTGTATCTCAGTGGTTCTTTTACACGGTGGTCTGAGCTTCTACTAATGTCGCCAGTCGAGGGTTGCCCAACTGTATTTCAAGTCATTTACAGCTTGACACCCGGTTACCATCAGTACAAGTTTTTTGTTGACGGAGAATGGCGACATGATGAGCGGCAACCTTGTGTACCTGGAGAGTATGGGATAGTTAACACTGTCTTGTTGGCTACTGATCCTAACTACATGCCTGTTGTAACCCCAGACATAACTTTTGGATCTAACATGGATGTGGATAATGAGGCCTTTCGGCGTGTGGTCCAGCTGACAGATGGTACATTGATGGAGGTATTGCCAAGAATATCTGATGCTGATGTACAGATCTCCCATCAGCGTGTTATTGCATTCTTGTCTATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTCATTGCTTTGGATGTTGATTTGCCAGTGAAACAAGCATTTCATATATTGCATGAGCAGGGAATCCCTATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGCGTTCTCAGTGCTATGGATTTTATTTTAATTTTAAGGGAGCTTGGGAATCATGGGTCCAGTCTGACAGAAGAGGAGCTTGAAACACATACCATATCTGCTTGGAAAGAAGGAAAATCATATCTTAATGGACATAAAAATGGTCCTGGAACAGCATTTTCAAGACGTTTTGTCCATGCAGGGCCATATGATAATTTGAAAGATATTGCCCTGAAGATCCTGCAAAATGAAGTTTCAACAGTTCCTATTATTCATTCATCTTCTGAAGACGGTTCATTTCCACAGCTATTACATCTTGCTTCACTTTCTGGAATACTTAAATGCATTTGCAGGTATTTTAGACATTGTTCTAGTTCATTGCCTATACTCCAACTACCCATTTGTGCAATTCCTGTCGGCACATGGGTGCCTAAAATTGGGGAGTCAAATCAGCGGCCTTTGGCAATGTTGAGACCAAGTGCTTCTCTTGCGTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGTTCAGTACCAATAGTTGATGATAGTGACTCGTTACTGGATATTTATTGTCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATTAATTTTGATGAAATGACTGTTCATCAGGCCTTACAATTGGGCCAGGATTCATATCAGCCTTATGAACTGAGAAGTCAAAGATGTCAGATGTGTTTGCGATCTGATTCTCTTCAAAAAGTGATGGAACGGTTGGCAAATCCAGGTGTTAGGCGGCTAGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCACTGACTGACATATTCAAGTTCTTCCTTGGTTAG 1533 0.4273 MGCWMSIDSVILGDTLIRGRMFSSSMDSARDTGSVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLLMSPVEGCPTVFQVIYSLTPGYHQYKFFVDGEWRHDERQPCVPGEYGIVNTVLLATDPNYMPVVTPDITFGSNMDVDNEAFRRVVQLTDGTLMEVLPRISDADVQISHQRVIAFLSMHTAYELLPESGKVIALDVDLPVKQAFHILHEQGIPMAPLWDFCKGQFVGVLSAMDFILILRELGNHGSSLTEEELETHTISAWKEGKSYLNGHKNGPGTAFSRRFVHAGPYDNLKDIALKILQNEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRHCSSSLPILQLPICAIPVGTWVPKIGESNQRPLAMLRPSASLASALNLLVQAQVSSVPIVDDSDSLLDIYCRSDITALAKDRAYTHINFDEMTVHQALQLGQDSYQPYELRSQRCQMCLRSDSLQKVMERLANPGVRRLVIVEAGSKRVEGIVSLTDIFKFFLG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1644 510 Gene3D Immunoglobulins 41 131 IPR013783 -
Glsi02g1644 510 SUPERFAMILY CBS-domain pair 178 347 IPR046342 -
Glsi02g1644 510 CDD E_set_AMPKbeta_like_N 42 120 - -
Glsi02g1644 510 FunFam Sucrose nonfermenting 4-like protein 38 123 - -
Glsi02g1644 510 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 175 508 - -
Glsi02g1644 510 Pfam Glycogen recognition site of AMP-activated protein kinase 41 123 IPR032640 -
Glsi02g1644 510 SMART cbs_1 378 426 IPR000644 -
Glsi02g1644 510 SMART cbs_1 196 245 IPR000644 -
Glsi02g1644 510 SMART cbs_1 460 509 IPR000644 -
Glsi02g1644 510 Gene3D - 358 510 IPR046342 -
Glsi02g1644 510 SUPERFAMILY CBS-domain pair 376 509 IPR046342 -
Glsi02g1644 510 ProSiteProfiles CBS domain profile. 190 253 IPR000644 -
Glsi02g1644 510 ProSiteProfiles CBS domain profile. 375 431 IPR000644 -
Glsi02g1644 510 ProSiteProfiles CBS domain profile. 456 510 IPR000644 -
Glsi02g1644 510 SUPERFAMILY E set domains 41 122 IPR014756 -
Glsi02g1644 510 Gene3D - 167 350 IPR046342 -
Glsi02g1644 510 Pfam CBS domain 377 422 IPR000644 -
Glsi02g1644 510 Pfam CBS domain 463 509 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1644 Glsi-ChrGlsi02 37787207 37802627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1644 31 131 Protein tyrosine phosphatase (PTP) family AT3G01510 31.731 1.20e-06 48.9