Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1571 ATGGAAGATGATGAGGCATGCAACACAGGGCTTTGTCTTGGACTGGGGATGGAAGGGTATGTGCCAAAGAAAAAGAAGCAGAAAGAGAACAGGGCAGTGGCTTGCTTGGACCTAACCTTTGAGCTTTGTCCCAAATTAGGGGAAACCTTTAGCATCGATCATGAGGAAGAAGAATTGAGTTTAAAGAGAACCGATGAGGGATACCAATTCCTAATTGCCAGAAGTGATAACGCCAACAGCAACAAGAATGACAGCAGAAAGAAACTGAGGCTCACAAAAGACCAATCGGCCTTGCTGGAGGACAGCTTCAAGCTGCATAGCACTCTCAACCCTGCTCAAAAACAAGCACTTGCTGAGCAATTGAATCTGAAGCCTAGGCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACAGAGGTAGACTGCGAGTTCTTGAAGAAATGCTGTGAAAATCTAACGGATGAGAACCGAAGGTTGAAGAAAGAGTTGCAGGAATTACGTGCACTAAAAGTTGGACAATTACCATTATGCATTCAACTCTCCAAAGAGGCGACGCTGACGATGTGTTCGTCGTGTGAGAAAGAGCTCAAGGCCAATGAAGGAAAGAACAATAATAGCAACCATAAATTGCAGAGTGAGATAGAATTTTAG 669 0.4395 MEDDEACNTGLCLGLGMEGYVPKKKKQKENRAVACLDLTFELCPKLGETFSIDHEEEELSLKRTDEGYQFLIARSDNANSNKNDSRKKLRLTKDQSALLEDSFKLHSTLNPAQKQALAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCENLTDENRRLKKELQELRALKVGQLPLCIQLSKEATLTMCSSCEKELKANEGKNNNSNHKLQSEIEF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1571 222 CDD homeodomain 86 143 IPR001356 GO:0003677
Glsi02g1571 222 SMART halz 142 185 IPR003106 GO:0006355|GO:0043565
Glsi02g1571 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 214 - -
Glsi02g1571 222 Pfam Homeodomain 86 140 IPR001356 GO:0003677
Glsi02g1571 222 Pfam Homeobox associated leucine zipper 142 175 IPR003106 GO:0006355|GO:0043565
Glsi02g1571 222 Coils Coil 141 175 - -
Glsi02g1571 222 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Glsi02g1571 222 FunFam Homeobox-leucine zipper protein 18 72 147 - -
Glsi02g1571 222 SMART HOX_1 84 146 IPR001356 GO:0003677
Glsi02g1571 222 Gene3D - 77 147 - -
Glsi02g1571 222 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Glsi02g1571 222 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1571 Glsi-ChrGlsi02 19369174 19370324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1571 1 200 Homeobox Transcription Factor Family AT4G37790 49.167 7.87e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi02g1571 Homeodomain 1e-16 CL0123