Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1563 ATGATGGTTTCGGATCAAACGGGTTCTGATATACCAAGAAAGTCTATGCAGAAGTTTGAAGATGATCAGAAGCAACTATTATCACCTCTTGGAACTGATAACAGTTGCAACAGTTCTTCGTATCACAATAATATCACTGTTAGGGTTTGTGCTGATTGCCACACCACTCAGACACCTCTTTGGAGGAGTGGACCAAGAGGCCCAAAGTCACTTTGCAACGCCTGTGGAATTCGACAAAGGAAGGCAAGGCGCGCCATGGCTGCGGCTGCATTGGCAAATGGCGAAAATCTAGCGCCCGAGACACCTCCTATGAAGGGAAACAAGTTATACAACAAACAGAAGAAGCCAAAAATTGGGTGCGCTGCACCCCAGTTGAAAAAGAAGCACAAGCTTGAATATGATCATGCACATAACAAACTTATACCTCATGGGAACCATAAACAGAGGCACTGCTTCTTCTTGGATGTTTCCCTTCACTTGAAATTGAATAGCCATCAACATCCTTCATCCCATGTGTTGGTCCACGGTGATTAG 534 0.4476 MMVSDQTGSDIPRKSMQKFEDDQKQLLSPLGTDNSCNSSSYHNNITVRVCADCHTTQTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAALANGENLAPETPPMKGNKLYNKQKKPKIGCAAPQLKKKHKLEYDHAHNKLIPHGNHKQRHCFFLDVSLHLKLNSHQHPSSHVLVHGD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1563 177 ProSitePatterns GATA-type zinc finger domain. 50 75 IPR000679 GO:0006355|GO:0043565
Glsi02g1563 177 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g1563 177 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 6 163 - -
Glsi02g1563 177 FunFam GATA transcription factor 21 44 134 - -
Glsi02g1563 177 Gene3D - 45 89 IPR013088 GO:0006355|GO:0008270
Glsi02g1563 177 ProSiteProfiles GATA-type zinc finger domain profile. 48 80 IPR000679 GO:0006355|GO:0043565
Glsi02g1563 177 CDD ZnF_GATA 49 77 IPR000679 GO:0006355|GO:0043565
Glsi02g1563 177 Pfam GATA zinc finger 50 83 IPR000679 GO:0006355|GO:0043565
Glsi02g1563 177 SMART GATA_3 44 96 IPR000679 GO:0006355|GO:0043565
Glsi02g1563 177 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 44 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1563 Glsi-ChrGlsi02 18137573 18139819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1563 34 102 C2C2-Gata Transcription Factor Family AT5G56860 65.714 5.19e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi02g1563 GATA 2.4e-17 CL0167