Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1547 ATGAATTCCTTACGGGGTTCACCTCGCCGCCAGAGTGACATAGAGGCCGGAAGTAGCAGCTCCAGCGATTGTGACGAAGGGGATAGTTCGTCGGATCCATTTGTTATTACCAGAACAAAGAATGCTCCAATTGAACGCCTTAAGCGTTGGAGGCAAGCCGCACTTGTGCTTAATGCTTCTCGTCGATTCCGTTACACCTTGGACTTGAAAAAAGAAGTAGAAAATCGGCAAATATTGAGGAAGATTAGGGCTCATGCGCAAGCCATTAGAGTATGGTTCCTTCAATTGGACTTCTTTACTATTGCTTTAACAGGAACCATACCAAGTCCTCCACCTCCCTTTGGTGACTTTGCAATTGGACAAGAAGAACTTTCTTCAATTTCAAGGGATCATAATATTAATGCTCTGCAGCAATATGGAGGGGTTAGAGGGCTATCAAATTTGTTGAAAACGGATATAGAGAAGGGGATTCATGGTGATAATGCAGACTTAGTAAAACGGAAGAATGCCTTTGGTTCAAACAATTATCCTCAAAAGAAAGGAAGGAGTTTTCTGCTTTTTATGTGGGATGCTTGCAAGGATCTGACCTTAGTTATATTAATGGTAGCTGCAGCAGCTTCATTAGCACTGGGAATAAAATCTGAGGGAATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTCATTCTTGTTATTGTCGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATTTAAATGAGGTGAAGAGAAATATACACTTAGAGGTTATAAGAGGTGGTAGAAGAGTTGAGATCTCAATATATGATATTGTTGTTGGTGATGTTGTACCCCTTAATATTGGTAACCAGGTCCCAGCTGATGGAATTTTTATCCACGGTCACTCTCTTGCTATTGATGAATCAAGTATGACTGGGGAGAGCAAGACTGTCTATAAGGATTCTAAGAACCCTTTTCTAATGTCTGGATGTAAAGTTGCGGATGGTAGTGGCACTATGCTGGTAATCAGTGTTGGTATTAATACTGAATGGGGGCTTCTAATGTCTAGTATTTCAGAAGACAATGGTGAAGAAACACCCTTGCAGGTACGTTTAAATGGTGTTGCCACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGCTGCTGTCCTGATTGTGCTACTGGCCAGATATTTCACTGGGCATACTACACACACAAATGGAACTGCTCAGTTTAAGGCGGGCAAGACAAAAATTGGTGATGCTATTGATGGAACAATTAAGATAGTCACAGTTGCGGTCACAATTGTAGTGGTTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCAGCCTGTGAGACAATGGGCTCTGCCACAACCATTTGCAGTGACAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTACATTGGTGGGAAGAAGTTTGATCCTCCTTACAAAGAGTCAGAGCTCCCTCCAAATATCTACACTTTGATCATTGAAGGTGTTGCCCAAAACACCAATGGCAGTGTTTATGTGCCTGAGGGTGGCACTGACATTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTATATTGGGGAATTGAGCTGGGGATGAATTTTGAGGCTGTCAGATCAGAGTCATCAATTATTCATGTTTTTCCATTTAATTCAGAGAAAAAACGCGGCGGAGTTGCAGTACAGACGCCTGACTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCATGTTGTTCAGGGTATATTGATGCAAATGACCAGTTAGTGGAGATGGATGAAGAGAAGATGACATTTTTAAAAAAAGCTATTGAAGATATGGCTGCTGATAGTCTGCGTTGTGTTGCCATTGCATATAGATCATATGAAATGGAGAGTGTTCCGACAAGTGAAGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTCGTTTTACTGGCTATTGTGGGTCTGAAGGATCCTTGTCGACCACATGTCAAAGAAGCTGTGCAACTCTGCCAAAAAGCTGGAGTTAAGGTACGAATGGTCACTGGTGACAATGTGAAAACTGCAAAATCAATTGCTGTGGAATGTGGAATACTTAGTTCATTTGCGGATGCCACTGAGACAAAGATCATTGAAGGAAAAGTATTTCGAGCTTTGTCAGATAAACAAAGAGACGAAATTGCTGACAGTATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCACTGAGGAGGATGGGACATGTTGTGGCTGTAACTGGAGATGGAACTAATGATGCTCCTGCACTACATGAGGCCGATATTGGTCTTGCAATGGGTATTCAGGGGACTGAAGTTGCTAAAGAGAGCTCAGATATCATTATTTTGGATGACAATTTTGCTTCTGTTGTGAAGGTTGTCAGATGGGGACGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAACTTACAGTCAATGTTGCAGCTCTTGTTATTAATGTTGTTGCTGCAGTTTCCTCTGGTGATGTCCCGTTAAATGCAGTACAGCTTCTTTGGGTAAATCTTATCATGGATACTCTTGGAGCACTAGCCTTGGCAACTGAACCACCTACCGATCATTTGATGGACCGGACTCCAGTAGGTCGAAGAGAACCTCTCATAACAAACATTATGTGGAGGAATCTGCTTATACAGGCAATGTACCAAGTATCTGTTTTGCTTGTACTCAATTTCCAAGGTAGGAGCTTACTGGATCTGAAGCATGATTCCAATGACTATGCTATCAAAGTGAAGAACACTTTAATATTCAATGCTTTTGTTCTCTGTCAAATCTTCAATGAATTTAATGCTCGAAAGCCAGATGAATTCAACATATTCAAGGGAGTCACAAAAAACTACCTCTTCATGGCGATAGTGGGATTAACTCTCGTGCTTCAGATTATCATCATTGAATTTCTGGGGAAGTTCACTTCAACAGTGAAGCTTAATTGGAAGCAGTGGCTCATTTCTGTTGCCATTGGAATTATCAGCTGGCCTCTTGCTGTGGTTGGGAAATTGATGCCTGTGCCCAAGGCTTCCGTCAGCAAGTGTTTTACAAGATTACACCCAAGAATTTTAAGAAGAAAGGAACATGAGTCTTCGTAA 3240 0.4167 MNSLRGSPRRQSDIEAGSSSSSDCDEGDSSSDPFVITRTKNAPIERLKRWRQAALVLNASRRFRYTLDLKKEVENRQILRKIRAHAQAIRVWFLQLDFFTIALTGTIPSPPPPFGDFAIGQEELSSISRDHNINALQQYGGVRGLSNLLKTDIEKGIHGDNADLVKRKNAFGSNNYPQKKGRSFLLFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFQDLNEVKRNIHLEVIRGGRRVEISIYDIVVGDVVPLNIGNQVPADGIFIHGHSLAIDESSMTGESKTVYKDSKNPFLMSGCKVADGSGTMLVISVGINTEWGLLMSSISEDNGEETPLQVRLNGVATFIGIVGLSVAAAVLIVLLARYFTGHTTHTNGTAQFKAGKTKIGDAIDGTIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYIGGKKFDPPYKESELPPNIYTLIIEGVAQNTNGSVYVPEGGTDIEVSGSPTEKAILYWGIELGMNFEAVRSESSIIHVFPFNSEKKRGGVAVQTPDSQVHIHWKGAAEIVLACCSGYIDANDQLVEMDEEKMTFLKKAIEDMAADSLRCVAIAYRSYEMESVPTSEEELAHWSLPEDDLVLLAIVGLKDPCRPHVKEAVQLCQKAGVKVRMVTGDNVKTAKSIAVECGILSSFADATETKIIEGKVFRALSDKQRDEIADSILVMGRSSPNDKLLLVQALRRMGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFQGRSLLDLKHDSNDYAIKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTKNYLFMAIVGLTLVLQIIIIEFLGKFTSTVKLNWKQWLISVAIGIISWPLAVVGKLMPVPKASVSKCFTRLHPRILRRKEHESS 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1547 1079 PANTHER CATION TRANSPORTING ATPASE 87 1054 - -
Glsi02g1547 1079 Gene3D - 163 358 - -
Glsi02g1547 1079 NCBIfam HAD-IC family P-type ATPase 423 505 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1547 1079 NCBIfam HAD-IC family P-type ATPase 757 870 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1547 1079 Pfam Cation transporter/ATPase, N-terminus 140 207 IPR004014 -
Glsi02g1547 1079 Pfam Cation transporting ATPase, C-terminus 875 1051 IPR006068 -
Glsi02g1547 1079 FunFam Calcium-transporting ATPase 190 247 - -
Glsi02g1547 1079 Pfam haloacid dehalogenase-like hydrolase 479 804 - -
Glsi02g1547 1079 FunFam Calcium-transporting ATPase 9 plasma membrane-type 336 506 - -
Glsi02g1547 1079 FunFam Calcium-transporting ATPase 807 1056 - -
Glsi02g1547 1079 SUPERFAMILY HAD-like 480 895 IPR036412 -
Glsi02g1547 1079 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 687 IPR023299 GO:0000166
Glsi02g1547 1079 Pfam Ca2+-ATPase N terminal autoinhibitory domain 31 73 IPR024750 GO:0005516
Glsi02g1547 1079 SFLD C1.7: P-type atpase like 464 842 - -
Glsi02g1547 1079 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 1053 IPR023298 -
Glsi02g1547 1079 Gene3D - 190 1043 - -
Glsi02g1547 1079 ProSitePatterns E1-E2 ATPases phosphorylation site. 484 490 IPR018303 -
Glsi02g1547 1079 NCBIfam calcium-translocating P-type ATPase, PMCA-type 132 1054 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi02g1547 1079 Gene3D - 43 97 - -
Glsi02g1547 1079 FunFam Calcium-transporting ATPase 237 358 - -
Glsi02g1547 1079 CDD P-type_ATPase_Ca_PMCA-like 166 923 - -
Glsi02g1547 1079 PRINTS P-type cation-transporting ATPase superfamily signature 705 715 - -
Glsi02g1547 1079 PRINTS P-type cation-transporting ATPase superfamily signature 790 809 - -
Glsi02g1547 1079 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Glsi02g1547 1079 PRINTS P-type cation-transporting ATPase superfamily signature 814 826 - -
Glsi02g1547 1079 PRINTS P-type cation-transporting ATPase superfamily signature 683 694 - -
Glsi02g1547 1079 PRINTS P-type cation-transporting ATPase superfamily signature 306 320 - -
Glsi02g1547 1079 Gene3D - 479 835 IPR023214 -
Glsi02g1547 1079 SFLD p-type atpase 464 842 IPR044492 -
Glsi02g1547 1079 Pfam E1-E2 ATPase 260 460 - -
Glsi02g1547 1079 SUPERFAMILY Calcium ATPase, transduction domain A 260 355 IPR008250 -
Glsi02g1547 1079 Gene3D - 492 690 IPR023299 GO:0000166
Glsi02g1547 1079 FunFam Calcium-transporting ATPase 684 835 - -
Glsi02g1547 1079 PRINTS Sodium/potassium-transporting ATPase signature 225 245 - -
Glsi02g1547 1079 PRINTS Sodium/potassium-transporting ATPase signature 475 496 - -
Glsi02g1547 1079 PRINTS Sodium/potassium-transporting ATPase signature 601 619 - -
Glsi02g1547 1079 SMART Cation_ATPase_N_a_2 138 212 IPR004014 -
Glsi02g1547 1079 MobiDBLite consensus disorder prediction 1 35 - -
Glsi02g1547 1079 FunFam Calcium-transporting ATPase 492 690 - -
Glsi02g1547 1079 FunFam Calcium-transporting ATPase 42 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1547 Glsi-ChrGlsi02 16643427 16660585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1547 4 1060 Primary Pumps ATPases AT5G57110 74.057 0.0 1590