Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1546 ATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCAGCCTGTGAGACAATGGGCTCTGCCACAACCATTTGCAGCGACAAGACTGGAACATTGACTATGAATCAGCCTGACTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCATGTTGTACAGGGAATATTGATGCAAATAACCAGTTAGTGGAGATGGATAAAGAGAAGATGACACTTTTTAAAAAAGCTATTGAAGAAATAGCTGCTGATAGTCTGCATTGTGTTGCCATTGCATATAGATCATATGAAATGGAGTGTGTTCCGACAAGTGAAGAACTTGTTCACTGGTCATTACCAGAGGATGATCTCGTTTTACTGGCTATTGTTGGTCTGAAGGATCCTTGTCGACCAGGTGTCAAAGAAGCTGTGCAACTTTGCCAAAAAGCTGGAGTTAAGGCACGAATGGTAATTGGTGACAATGTGAAAACTGCAAAATCAATCGCTGTGGAATGTGGAATACTTAGTTCATTTGCGAATGGCACAGAGCCAAACATCATCGAAGGAAAAGTATTTCGAGCTTTGTCAGATAAACAGAGAGACGACATTGCTGAAAGGATATCGGTATTATTTAATTACTTTGACAACCTTTTGTTTGTGCTCTTACTCATTGAGGAGGATGTGTCATGTCGTGGCTCAACTGGAGATGGAACTAAAGATGCTCTTACATTAAATATCTGTAGTGGTCCCATTCTATTCTATAGCCCATTAGAATATAAGGCTTGGTTTGGACTGGGCCAATATAATTCTCCCCACAAATTCAAAAGTAAGAAACTGATAGCTCCCTATATCTCAAAGGTTGGGCTAACAGGAGTTTTACGAATCAAGGGAACATCATACACCCATGTGGATCAAATAAAGAGCGATGTCTTTGGGACATTGCTTGCAGATAACATCATTGGCGTACACCACGATCACTACTTAACGTACCATCTTGACCTTGACATTGATGGCGTTGAGAACTCGTTCATCAAGACCAATTTGGAGACCGTGACAGTGAAAGATCACAGTTCGCCAAGGAAAAGTTACTGGAATGTTGTGCAGGAAACTGCTAAAACAGAAGCTGATGCTCGAATCAAACTGGGATTGCAGCCATCTGAATTTGCAGAGCAAAAGCAGAAAAAATAA 1173 0.4109 MMADKALVRRLSACETMGSATTICSDKTGTLTMNQPDSQVHIHWKGAAEIVLACCTGNIDANNQLVEMDKEKMTLFKKAIEEIAADSLHCVAIAYRSYEMECVPTSEELVHWSLPEDDLVLLAIVGLKDPCRPGVKEAVQLCQKAGVKARMVIGDNVKTAKSIAVECGILSSFANGTEPNIIEGKVFRALSDKQRDDIAERISVLFNYFDNLLFVLLLIEEDVSCRGSTGDGTKDALTLNICSGPILFYSPLEYKAWFGLGQYNSPHKFKSKKLIAPYISKVGLTGVLRIKGTSYTHVDQIKSDVFGTLLADNIIGVHHDHYLTYHLDLDIDGVENSFIKTNLETVTVKDHSSPRKSYWNVVQETAKTEADARIKLGLQPSEFAEQKQKK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1546 390 PANTHER CATION TRANSPORTING ATPASE 1 35 - -
Glsi02g1546 390 Gene3D - 39 130 IPR023299 GO:0000166
Glsi02g1546 390 NCBIfam HAD-IC family P-type ATPase 6 170 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1546 390 Pfam haloacid dehalogenase-like hydrolase 21 176 - -
Glsi02g1546 390 Gene3D - 21 33 IPR023214 -
Glsi02g1546 390 Gene3D - 131 239 IPR023214 -
Glsi02g1546 390 Gene3D Copper amine oxidase, catalytic domain 276 390 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Glsi02g1546 390 Pfam Copper amine oxidase, enzyme domain 281 377 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Glsi02g1546 390 ProSitePatterns E1-E2 ATPases phosphorylation site. 26 32 IPR018303 -
Glsi02g1546 390 Gene3D - 1 20 - -
Glsi02g1546 390 SUPERFAMILY Amine oxidase catalytic domain 281 383 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Glsi02g1546 390 SUPERFAMILY HAD-like 116 243 IPR036412 -
Glsi02g1546 390 PRINTS P-type cation-transporting ATPase superfamily signature 145 155 - -
Glsi02g1546 390 PRINTS P-type cation-transporting ATPase superfamily signature 229 248 - -
Glsi02g1546 390 PRINTS P-type cation-transporting ATPase superfamily signature 24 38 - -
Glsi02g1546 390 PRINTS P-type cation-transporting ATPase superfamily signature 123 134 - -
Glsi02g1546 390 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 33 135 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1546 Glsi-ChrGlsi02 16540869 16554757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1546 1 35 Primary Pumps ATPases AT4G29900 94.286 4.24e-14 72.4