Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1535 ATGGATGACCAAAGCACACTAGAATCCATTTTAAGCATCCTATTCTCTTCTCATCTTCCCTCTTGCCCCTTCCATCTCTCTGCGTTTGTCTCTCCAAAGGACATATCCATGGAGAATATTGGTGAAGAGTACAGACATTACTGGGAGACCAACATGTTCCTTCAAACCGAAGAGCTCGACAGCTTGGGATTGGATGAGGCTTTCTCCGGTTACTACGATTCGAGCTCGCCGGACGGTGCTGCGTCTTCGGCGGCATCTAAGAACATTGTCTCCGAGCGGAATCGGAGGAAGAAGCTCAACGAACGGCTTTTTGCACTCAGAGCGGTGGTTCCCAACATTAGCAAGATGGACAAGGCTTCTATAATTAAGGATGCTATCGAGTATATCCAACACTTGCACGAGCAAGAGAAGAGTATTCAAGCGGAGATAATGGAGCTTGAGTCCGGGAAGCTGAAGAAAAACTCAAGCAATGAGTTTGAACAGGATTTGCCTGTTCTTCTGAGGTCCAAGAAGAAAAAAACAGAGCAGCAGCTTTATGATTCTGTCAGTCCTAGAAATTCCCCAATTGAAGTCCTTGAGCTGAGGCTAACATACATGGGAGAGAAGACGGTTGTGGTGAGCTTGACGTGCAGTAAAAGGACAGACACAATGGTAAAACTCTGCGAAGTGTTCGAATCTTTGAAGCTGAAGGTCATAACAGCCAATATAACTTGTTTCTCAGGCAGGCTCTTGAAGACAGTCTTCATTGAGGCAGATGAAGAAGAGAAAGATCTTTTGCAGATAAAAATCCAAACAGCCATTGCAGCTCTTAATGATCCTCAAAGCCCCATGAGTATCTGA 840 0.4524 MDDQSTLESILSILFSSHLPSCPFHLSAFVSPKDISMENIGEEYRHYWETNMFLQTEELDSLGLDEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKSIQAEIMELESGKLKKNSSNEFEQDLPVLLRSKKKKTEQQLYDSVSPRNSPIEVLELRLTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKVITANITCFSGRLLKTVFIEADEEEKDLLQIKIQTAIAALNDPQSPMSI 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1535 279 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 79 154 - -
Glsi02g1535 279 Gene3D - 80 149 IPR036638 GO:0046983
Glsi02g1535 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 147 IPR036638 GO:0046983
Glsi02g1535 279 Pfam Helix-loop-helix DNA-binding domain 90 133 IPR011598 GO:0046983
Glsi02g1535 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Glsi02g1535 279 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 264 - -
Glsi02g1535 279 SMART finulus 89 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1535 Glsi-ChrGlsi02 15473728 15479019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1535 37 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.138 5.17e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g1535 HLH 5.1e-12 No_clan