Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1527 ATGATTATACAATCACTGGCAGATTTTTGCATCTTAATTATAGAAAATCTGACCAAACCTCGACGAAGATTTCATTTTCCTTTTGACAAGACAGAGATACTATGCATTCCTCCATATATTCTGACAAACATGGGGGCTTTTAGTTATTCTGAAAAGGAGCTGTCTTCATCAAAGTTACAAGGTGAGAAAATTTCCTTCAGTTCTGAGAAAGAGGGGAAATATGTAAGTGGGGAGGTAAAAACTCAAAAACTAAAGAAGAGAAGGAGAAAGAAGAGAAGGCAATGGGACAATGTAAAGCTTGATGATGCTTCACGCCTACAGAGAAGAACAAGGTACCTTTTAATCAAAATGAAGCTGGAACAGAACCTTATCGATGCTTATTCTGGAGAAGGTTGGAAGGGTCACAGTCGAGAAAAGATTAGGCCAGAGAAGGAGCTACAAAGAGCACAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCCATTCGCCAGTTGGATAATCTTAGTTCAGCAGGTAGTATTGAAGATTCTGCCATTGCTCCAGATGGATCTGTTTACCATGAAAATATATTCTGTGCCAAGTGCAAGTTGCGTGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATTGTGCTTTTCACCAAAAATGTCTTGATCCTCCTTTGGACACCGAAAATATTCCTCCAGGAGAGCAGGGCTGGTTTTGCAAGTTTTGTGAAAGTAAGATAGAAATACTGGAGGTAGTAAATGCTCATCTCGGGACTTATTTCTCCATGGACAGTACATGGCAGGATCTATTCAAGGAAGAAGCTGCATTACCTGATGGTGATACTGCATTAAATCCAGAAGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTACAATCCAGACAAGAGAGAAGACAGCCCTAGCACCAGCACAGAAGGAAATGATGATAATGCATCTGATGATTCAAGCAGTTCTACCAGTCTGTGGTCTTTGAATTGTGAATATTCTCCAGGAAAAGGAGGCATCAGCCATGAATGTTTATCTGTCAATAACTGTATGGATTCTGATGAATATGGCGAAATAGGATGTGGCCGTAGGCAGCGAAAAGCAGTCGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGTTCCTGCATGTGAACAAATTAGTGAAGATGAGGACTGGGGTCCTGGCAAAAGAAAGCAAAGAGAAAAGGAGTCTGACGCAGTTAATACTCTTATGACTCTGCATGAAAGTGAGAATAAATATTCCAATAATGAACAGGATATGGTGATAAAAGCTTCCCCAAGCATACAAATTAGAAGGCCTTCTTTCAGGATTCCGCGTGATGCAGTTGAGGTCTACTAG 1383 0.3999 MIIQSLADFCILIIENLTKPRRRFHFPFDKTEILCIPPYILTNMGAFSYSEKELSSSKLQGEKISFSSEKEGKYVSGEVKTQKLKKRRRKKRRQWDNVKLDDASRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGHSREKIRPEKELQRAQKQILKCKLGIRDAIRQLDNLSSAGSIEDSAIAPDGSVYHENIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGEQGWFCKFCESKIEILEVVNAHLGTYFSMDSTWQDLFKEEAALPDGDTALNPEEEWPSDDSEDDDYNPDKREDSPSTSTEGNDDNASDDSSSSTSLWSLNCEYSPGKGGISHECLSVNNCMDSDEYGEIGCGRRQRKAVDYKKLYDEMFGKVPACEQISEDEDWGPGKRKQREKESDAVNTLMTLHESENKYSNNEQDMVIKASPSIQIRRPSFRIPRDAVEVY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1527 460 CDD PHD_PRHA_like 193 245 IPR045876 -
Glsi02g1527 460 FunFam pathogenesis-related homeodomain protein-like 185 245 - -
Glsi02g1527 460 Pfam PHD-finger 193 247 IPR019787 -
Glsi02g1527 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 256 IPR013083 -
Glsi02g1527 460 MobiDBLite consensus disorder prediction 281 331 - -
Glsi02g1527 460 MobiDBLite consensus disorder prediction 288 303 - -
Glsi02g1527 460 ProSitePatterns Zinc finger PHD-type signature. 194 245 IPR019786 -
Glsi02g1527 460 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 52 458 - -
Glsi02g1527 460 MobiDBLite consensus disorder prediction 315 331 - -
Glsi02g1527 460 ProSiteProfiles Zinc finger PHD-type profile. 191 248 IPR019787 -
Glsi02g1527 460 SUPERFAMILY FYVE/PHD zinc finger 185 250 IPR011011 -
Glsi02g1527 460 SMART PHD_3 193 246 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1527 Glsi-ChrGlsi02 15231754 15235570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1527 93 458 Homeobox Transcription Factor Family AT4G29940 57.937 3.37e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi02g1527 PHD 8.5e-11 CL0390