Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1490 ATGTCTTTTCCTTCTACATTGATTTTCTCCTCTGTTTTCTTCTGCTTCTCTGACTTCTATGTGTTGTTCCTAGCTAGTCTTTGTGCATCACTCTTCAGTCGTGAGCCGCTATGTGACATCATTCCTGTCAATGCTCGTCTTCTTGAGGGTGACCCTCTGAAGGTTGATCAGTTTGCTCTAACTGGAGAGTCTCTTCCTATGACCAAGAACCCTGGGGATGAAATTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTTATTGCAACCAGTGTCCACACCTTTTTCGGGAAGGCAGCTCACCTTGTGGAAAGTACCAATCAAGTTGGTCATTTCCAGAAGGCAAGGGCTGGGGTTAAGGAGATGCACTTCTTCCCATTCAATCCTGTTGACAAAAGAACTGCTTTGACTTACATTGATGCTAATGGAAGTTGGCATCGGGCGAGAAAAGGTGCTCCTGAGGAAGATGCTAAGAAGAAAGTCCATGCTATTATAGACAAGTTTGCAGAAAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGTTCTTATAGCTTGCCTTATTGTCGAGATTTTAAAGCGCTGGCGGTCTATGGCAGTTGTTGGCTTGTTGCCCCTGTTCGATCCCCCTAGCCATGACAGTGCTGAAACCATTCGAAGAGCTCTTAATCTCGGTGTAAATGTCAAGATGATTACTGGTGATCAACTGGCCATAGCAAAGGAGGCTGGAAAGAGACTTGGCATGGGAACAAACATGTACCCATTTGCTTCCTTGCTTGGTAAAGACAAAGATGCAAGTATTGCTGCACTTCCTGTAGAAGAGTTGATTGAGAAAGCAGATGGATTCGCTGGAGTATTTCCAGAGCATAAGTATGAAATTGTAAAGAAGTTGCAAGAGAGGAAGCATATTTGTGGATTGACCGGAGATGGTGTCGACGATGCCCTTGCATTAAAGAAGGAAAATATTAGTATTGTTGTTGCCAATGCCACCGATACCGCAAGAGGTGCTTTCGATATTGTCTTGACTAAACCTGGATTGAGTATCTATGTAGTATCTATCACTATACGTATAGTAGATAGGGTGAAGCCATCTCCCTTGCCAGATAGCTGGAAACTGAAAGAAATTTTTGCTATTGGGATTGTGCTTGGAGTTAGCATAGTGAGTCAAGCTCTGATATTTGTAACCCATTCTCGTAGCTGGTCCTATGTGGAACGCCCAGGATTGTTGTTAGTCACTGCTTTTGTTCTTGCTCAACTGATTGATACAATAATAGTAGTATATGCAGACTTGGGCTTTGCAAAGATCAAAGGAATTGGTTGGGGTTGGGCTGGAGTCATCTGGCTTTACAGTATTGTCTTCTATGTTCCACTTGACTTCATGAAGTTCGCCATCTGCTATAAGTGGCAAGGCTTGGCTAAATCTGCTAGAAAACAGGACTATGGAAAGGAGGAGAGGGAGGCTCAATGGGCATTTACTCAGAGGACCTTGCGTGGCCTTCAACCACCCGAAACATCTAATCTTTTCAGTGACAAGAACAGTTACCGAGAGCTGTTTGAGATTGTTGAGCAGGCCAAGAGACGAGCTGAAGTTGCGAGGCTTTGCGAACTTCACACGCTCAAGGGACATGTTGAGTCGGTGGTGAAGATGAAAGGCTTGGACATTGATACGATCCAATAG 1686 0.4419 MSFPSTLIFSSVFFCFSDFYVLFLASLCASLFSREPLCDIIPVNARLLEGDPLKVDQFALTGESLPMTKNPGDEIFSGSTCKQGEIEAVVIATSVHTFFGKAAHLVESTNQVGHFQKARAGVKEMHFFPFNPVDKRTALTYIDANGSWHRARKGAPEEDAKKKVHAIIDKFAERGLRSLAVARQVLIACLIVEILKRWRSMAVVGLLPLFDPPSHDSAETIRRALNLGVNVKMITGDQLAIAKEAGKRLGMGTNMYPFASLLGKDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGLTGDGVDDALALKKENISIVVANATDTARGAFDIVLTKPGLSIYVVSITIRIVDRVKPSPLPDSWKLKEIFAIGIVLGVSIVSQALIFVTHSRSWSYVERPGLLLVTAFVLAQLIDTIIVVYADLGFAKIKGIGWGWAGVIWLYSIVFYVPLDFMKFAICYKWQGLAKSARKQDYGKEEREAQWAFTQRTLRGLQPPETSNLFSDKNSYRELFEIVEQAKRRAEVARLCELHTLKGHVESVVKMKGLDIDTIQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1490 561 Gene3D - 515 561 - -
Glsi02g1490 561 SUPERFAMILY Calcium ATPase, transduction domain A 39 106 IPR008250 -
Glsi02g1490 561 Gene3D - 113 210 IPR023299 GO:0000166
Glsi02g1490 561 PRINTS H+-transporting ATPase (proton pump) signature 282 298 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1490 561 PRINTS H+-transporting ATPase (proton pump) signature 341 366 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1490 561 PRINTS H+-transporting ATPase (proton pump) signature 310 326 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1490 561 PRINTS H+-transporting ATPase (proton pump) signature 164 182 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1490 561 Pfam haloacid dehalogenase-like hydrolase 140 322 - -
Glsi02g1490 561 Gene3D - 383 470 - -
Glsi02g1490 561 Gene3D - 94 108 - -
Glsi02g1490 561 Gene3D - 211 347 IPR023214 -
Glsi02g1490 561 Gene3D - 39 93 - -
Glsi02g1490 561 SUPERFAMILY HAD-like 159 349 IPR036412 -
Glsi02g1490 561 SUPERFAMILY Calcium ATPase, transmembrane domain M 365 470 IPR023298 -
Glsi02g1490 561 PANTHER CALCIUM-TRANSPORTING ATPASE 387 498 - -
Glsi02g1490 561 FunFam ATPase 2, plasma membrane-type 202 347 - -
Glsi02g1490 561 Pfam E1-E2 ATPase 39 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1490 Glsi-ChrGlsi02 13796123 13803441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1490 116 559 Primary Pumps ATPases AT2G18960 59.821 0.0 612