Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1482 ATGGAGTGGGACAGCAATTCGGATCTGAGCGGGGACGAGGAGGAAACCTTCATGCTCAACGATGGTGGCCCTCTTCCCTTCCCGGTCGAGAATTTGCTCCAAACGGCTCCCTGTGGGTTCGTCGTCACTGATGCGCTCGAGCCTGACCATCCAATTATTTATGTCAACACCGTGTTCGAGATGGTCACTGGGTATCGGGCAGAAGACGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGATTCAACTGTAGTTTCAGAAATTAGGAGATGCCTTGAGAAGGGTATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGACTATAACACATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGCTCTGGGTTCTGCAATTAAGGAATCTGCTAAATCATCTGATCTGTTTCGTTCTGTGCTTTCCTCACTGAGTCCTCTTCCAGTTGGGGACCGGAATGTATCTCGTGGAGTTTGTGGGTTACTGCAATTGAGTGATGAGGTAATGTCTCTCAAAATACTTGCCCGCTTAACTCCAAGAGATATTGCTTCTGTTGGCTCTGTCTGCAGGCGATTGTATGAATTAACAAGGAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGAAGTGAAACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGGCTTGGATGGGGTCGGCTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAGCTGACTGTTGGCGGTGCTGTTGAACCCTCGCGCTGTAATTTTAGTGCTTGTGCGGTTGGTAATAGAGTTGTTCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTGTTAGATCTTAATTCGAATAATCCTGAGTGGCAACACGTCCAGGTGAGCTCTCCTCCTCCTGGTCGATGGGGTCACACAATTTCTTGTGTTAATGGTTCTAATCTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTGCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATATCTGGATTGGCACCTCCACTCCCAAGATCGTGGCACAGTTCCTGTACTCTTGACGGTACTAAGTTAATAGTTTCTGGTGGCTGTGCAGATTCTGGAGTACTTTTGAGTGACACATTCCTCCTTGATCTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTGGCATGGACCCCACCTTCACGTCTGGGTCATACACTGTCTGTATATGGTGGTAGGAAAATACTGATGTTTGGAGGTCTGGCCAAGAGTGGGCCTTTGCGGTTTCGTTCCAGTGATGTATTCACCATGGATTTAAGTGAGGAGGAACCATGTTGGAGATCTGTAACTGGGAGTGGAATGCCTGGTGCTGGGAATCCTGGGGGTGTTGCTCCCCCTCCAAGACTTGATCATGTTGCTGTTAGTCTTCCAGGTGGGAGAATCCTGATATTTGGTGGATCTGTTGCAGGTCTTCACTCTGCTTCCCAGCTTTACATCCTGGACCCAACTGATGAGAAGCCTACATGGAGAATTCTGAATGTACCCGGGCGACCTCCAAGATTTGCATGGGGACACAGTACATGTGTGGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGAGAGGAATGGATGCTAAGCGAACTCCATGAGCTTTCTCTGGCAAATTCTGTCATCTAG 1833 0.4823 MEWDSNSDLSGDEEETFMLNDGGPLPFPVENLLQTAPCGFVVTDALEPDHPIIYVNTVFEMVTGYRAEDVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEKGIEFQGELLNFRKDGSPLMNRLRLTPIYGDDETITHVIGIQFFTEANIDLGPALGSAIKESAKSSDLFRSVLSSLSPLPVGDRNVSRGVCGLLQLSDEVMSLKILARLTPRDIASVGSVCRRLYELTRNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRSVTGSGMPGAGNPGGVAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLANSVI 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1482 610 SUPERFAMILY Galactose oxidase, central domain 281 595 IPR011043 -
Glsi02g1482 610 Pfam Galactose oxidase, central domain 294 344 - -
Glsi02g1482 610 CDD PAS 36 146 IPR000014 -
Glsi02g1482 610 FunFam Adagio protein 1 195 242 - -
Glsi02g1482 610 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 147 IPR035965 -
Glsi02g1482 610 Gene3D - 274 473 IPR015915 GO:0005515
Glsi02g1482 610 FunFam Adagio protein 1 27 158 - -
Glsi02g1482 610 Pfam Galactose oxidase, central domain 358 405 - -
Glsi02g1482 610 Gene3D - 474 608 IPR015915 GO:0005515
Glsi02g1482 610 FunFam Putative LOV domain-containing protein 271 475 - -
Glsi02g1482 610 CDD F-box_AtADO-like 197 243 - -
Glsi02g1482 610 FunFam Putative LOV domain-containing protein 476 609 - -
Glsi02g1482 610 Pfam PAS domain 37 147 IPR000014 -
Glsi02g1482 610 NCBIfam PAS domain S-box protein 32 146 IPR000014 -
Glsi02g1482 610 Pfam F-box-like 208 244 IPR001810 GO:0005515
Glsi02g1482 610 Gene3D PAS domain 22 158 - -
Glsi02g1482 610 Gene3D - 195 242 - -
Glsi02g1482 610 ProSiteProfiles PAS repeat profile. 29 107 IPR000014 -
Glsi02g1482 610 Pfam Kelch motif 518 565 IPR011498 GO:0005515
Glsi02g1482 610 Pfam Kelch motif 451 502 IPR011498 GO:0005515
Glsi02g1482 610 SUPERFAMILY F-box domain 190 259 IPR036047 GO:0005515
Glsi02g1482 610 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 27 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1482 Glsi-ChrGlsi02 13470816 13480337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1482 33 241 AGC Kinase Gene Family AT5G58140 25.751 7.01e-15 76.3