Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1480 ATGGCTGAAAATATGAAGAAAAGCTACTTTGAAGTGCTGGGGATGTGCTGTAGTTCAGAGGTGGCTCTGATTGAAAGGATTCTGAAGCGTCTTCATGGAGTGAAGGAGATTTCAGTAATGTTCCCTACCCGAACCGTCTCTGTAGTTCATGATCCTCATCTTATTTCTGCTCCGCAAATCGTTGATGCGCTAAATGTGGCAAGGCTTGAAGCTAGTTTGAAACCGGAGGGAGAGACCGGGTATGAAAAGAAATGGCCAGCCCCAGCAACATTGGTTTGTGGATTGTTGCTGGCACTATCTTTCTTGAAGTACGTTTATCAGCCTTTGGGATGGTTGGCGATTGGGGCTGTCATCGTTGGCTTCCCCAGAGTGCTATTAAGAGGCATAGCTTCCATTAGGACTCTTACTCTTGATATCAACATTCTAAGTCTATTGGCAGTGTGTGGTACTCTTGGTCTGCAAGAATATTGGGAAGCTGGAATCATCATCTTCCTATTCTCCATTGCTCAATGGCTCGAGACAAGAGCAAGTTACAAGGCTATGGTTACTATGTCCTCTTTAACGAACATGGCTCCTCAAAAGGCCATTATTGCGAAGACTGGTGAACATCTTGATGTAAATGCTGTTAAGATCAACACCATCCTTGCAGTCAAGGCTGGTGATGCTATTCCTCTTGATGGTACAGTGGTGGAAGGAAAATGTGAAGCCGATGAAAAAATGTTGACTGGGGAATCATTCCCTACCACCAAAGAGTTGGGTTCAATTGTCTGGGCTGGCACTATTAATATAAATGGTTATATTAGTGTGAGAACTACTGCATTGGCAAAAGATACAACGGTAGCAAGAATGGCAAAGCTTGTTGAGGAGGCTCATGCTAGAAAATCTCAGGTCCAAAGATTCATAGATAACTGTGCAAAGTACTATATTCCTGTGGTTGTGTTGATGTCGGCTGGCATTGCCGTGATTCCAGCTGCATTAGGCGTTCCTAATATTAAGCACTGGTGTTACATGGCAATTGTGGTTTTAGTAAGTGCATGTCCTTGTGCTCTTATCCTCTCTACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCCACAAGTGGGCTGCTTCTGAAAGGTGGAGATTATCTGGAAACACTTGCCGGGATTAAGACGGTGGCTTTTGATAAAACAGGCACAATAACAAAAGGACAGTTCACTGTCACAGATTTTTGTGCTGTTGGAGATGATATTGGCATCGAATTGTTATTGTTCTGGGTCTCTAGTATTGAGAGTAAATCAAGCCACCCTATGGCAGCTGCACTTTTGGAATATGGAAGGTTACACTCTATCAAACCTATCCCTGAAAATGTGGAGGATTTTCAGAATTTTCCTGGGGAAGGAGTATTTGGCAAAATTGATGGGAAAGATATTTACATTGGCAACCGGAAAATATGTGTGAGAGCTGGTTGTGAAAGAGAGTTTCAAGGCGAAGAAAAAAGAAATGGTTATATATGCTGTGGACCAACTCTAATTGGAGTCTTCAGCCTATCTGATACTTGCCGATATGGTGCTTTAGAGGCAATAGAAGAGCTGAAGTCATTAGGTGTGAAATCAGTCATGCTGACAGGAGATAGCACTCATGCTGCGAAGCTCGTTGAGAATCAGTTGAACAATGCTCTAGACGTTGTTCATGCAGAGCTTTTACCTGAGGAAAAGGCAGAGATAATTGAGAATTTTAAGAAAGATGGGCTAATAGCTATGATTGGAGATGGTATGAACGACGCCCCAGCATTAGCTACAGCTAACATTGGCATCTCAATGGGAATATCTGGTTCAGCTCTAGCAATTGAGACAGGGCACGCAATTCTCATGTCAAACGACATCCGAAAGATCCCTGAAGCAATTCAACTGGCAAGAAAAACTCGTACAAAGCTCGTTCAGAATGTCATAGTTTCCATTGCCACGAAGGGCGCCACACTGGCATTGGCATTTGCAGGGTATCCGCTTGTTTGGCTTGCTGTTTTGACCGATGTGGGCTCCTGCTTACTTGTGATTCTCAATAGCATGCTACTTTTGCAAGAAAAACACAAAAATGAAAGACGATCCAGAAGATCTAAATATGGCAACTTCTTGGAAGACAAGAGCACAACTCTACTTGACAAGCAAACTGATTGTGATGACTACGACGGGCTTCTCAGTGGAAAGAATTGTGGTGAAGGATGCTGCAGCAATGTCATTCATCAAGAGACAAATCCGAGTGCAGTCAAACACGAAGCTTCTGGTTCTGTACCTTCAAATTTGAGCTTGCTCAAGGGAAGGCATCATGGGAATTTGGTCTCTGAAGAAGTTCAAATATTGAAGACTTGCAATGATGGCTGTTGTGACAAAGTCAGAAGATGTGAAGACTCTTTAAGCTCTGATTGTTGCCAGCTGGAAAGCGAAGACGCCCAAGTTAAGACACAAAAGGGTTGTTCTGGACCTGTTTTGCATGATGCTGCCAATGCTAGCTTCATTTCAAAGTGTTCTAAGACATGTGGAAATGGTAAATGCTTCGAACAATTCGGGAAGATATGCTCCAATTATTGTGTTGCGATACCAAAAATTGTTATAGAGTGA 2601 0.4295 MAENMKKSYFEVLGMCCSSEVALIERILKRLHGVKEISVMFPTRTVSVVHDPHLISAPQIVDALNVARLEASLKPEGETGYEKKWPAPATLVCGLLLALSFLKYVYQPLGWLAIGAVIVGFPRVLLRGIASIRTLTLDINILSLLAVCGTLGLQEYWEAGIIIFLFSIAQWLETRASYKAMVTMSSLTNMAPQKAIIAKTGEHLDVNAVKINTILAVKAGDAIPLDGTVVEGKCEADEKMLTGESFPTTKELGSIVWAGTININGYISVRTTALAKDTTVARMAKLVEEAHARKSQVQRFIDNCAKYYIPVVVLMSAGIAVIPAALGVPNIKHWCYMAIVVLVSACPCALILSTPVAIFCALTKAATSGLLLKGGDYLETLAGIKTVAFDKTGTITKGQFTVTDFCAVGDDIGIELLLFWVSSIESKSSHPMAAALLEYGRLHSIKPIPENVEDFQNFPGEGVFGKIDGKDIYIGNRKICVRAGCEREFQGEEKRNGYICCGPTLIGVFSLSDTCRYGALEAIEELKSLGVKSVMLTGDSTHAAKLVENQLNNALDVVHAELLPEEKAEIIENFKKDGLIAMIGDGMNDAPALATANIGISMGISGSALAIETGHAILMSNDIRKIPEAIQLARKTRTKLVQNVIVSIATKGATLALAFAGYPLVWLAVLTDVGSCLLVILNSMLLLQEKHKNERRSRRSKYGNFLEDKSTTLLDKQTDCDDYDGLLSGKNCGEGCCSNVIHQETNPSAVKHEASGSVPSNLSLLKGRHHGNLVSEEVQILKTCNDGCCDKVRRCEDSLSSDCCQLESEDAQVKTQKGCSGPVLHDAANASFISKCSKTCGNGKCFEQFGKICSNYCVAIPKIVIE 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1480 866 CDD P-type_ATPase_HM 89 685 - -
Glsi02g1480 866 NCBIfam HAD-IC family P-type ATPase 162 664 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi02g1480 866 ProSitePatterns Hypothetical cof family signature 2. 583 605 - -
Glsi02g1480 866 FunFam Putative cadmium/zinc-transporting ATPase 3 2 74 - -
Glsi02g1480 866 FunFam Copper-transporting ATPase 1, putative 177 291 - -
Glsi02g1480 866 Pfam E1-E2 ATPase 198 366 - -
Glsi02g1480 866 Gene3D - 399 515 IPR023299 GO:0000166
Glsi02g1480 866 SUPERFAMILY Calcium ATPase, transmembrane domain M 140 382 IPR023298 -
Glsi02g1480 866 Gene3D - 379 634 IPR023214 -
Glsi02g1480 866 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi02g1480 866 PRINTS Cadmium-transporting ATPase signature 253 269 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi02g1480 866 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi02g1480 866 PRINTS Cadmium-transporting ATPase signature 272 286 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi02g1480 866 PRINTS Cadmium-transporting ATPase signature 174 194 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi02g1480 866 SUPERFAMILY HAD-like 386 684 IPR036412 -
Glsi02g1480 866 FunFam Putative cadmium/zinc-transporting ATPase 3 399 515 - -
Glsi02g1480 866 NCBIfam cadmium family heavy metal-translocating P-type ATPase 139 687 - -
Glsi02g1480 866 SFLD Haloacid Dehalogenase 371 636 - -
Glsi02g1480 866 NCBIfam heavy metal translocating P-type ATPase 139 686 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi02g1480 866 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 690 - -
Glsi02g1480 866 SFLD p-type atpase 371 636 IPR044492 -
Glsi02g1480 866 SUPERFAMILY HMA, heavy metal-associated domain 3 75 IPR036163 GO:0046872
Glsi02g1480 866 PRINTS P-type cation-transporting ATPase superfamily signature 529 539 - -
Glsi02g1480 866 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Glsi02g1480 866 PRINTS P-type cation-transporting ATPase superfamily signature 583 602 - -
Glsi02g1480 866 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Glsi02g1480 866 CDD HMA 10 64 IPR006121 GO:0046872
Glsi02g1480 866 Pfam haloacid dehalogenase-like hydrolase 384 597 - -
Glsi02g1480 866 Gene3D - 177 291 - -
Glsi02g1480 866 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Glsi02g1480 866 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Glsi02g1480 866 Gene3D - 2 74 - -
Glsi02g1480 866 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1480 Glsi-ChrGlsi02 13400873 13411779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1480 2 819 Primary Pumps ATPases AT4G30110 54.035 0.0 897