Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1478 ATGAAGTACATTCGCACCAACAGCTTGAAGCGCCTCTTCTCTTTCAAACGACGCAGCTTTGGGGAGGAAAAAAACGTTGAGAGCTTCGAGATTCCTCCCAGACCCACCTGGAAATGCTTCTCTTATGAACAACTATTCAACGCCACCAATGGTTTCAGCATAGGAAATCTAGTCGGAAAAGGAGGGTTCGCAGAGGTTTACAAGGGAAAATTAGAAGGTGGCGAAGAAATTGCTGTAAAAAGGCTCACACAAATTTGCAGTGACGAGAGGAAGGAGAAGGAGTTTTTGACAGAGATTGGTACAATTGGTCACGTGCGACATTCGAACGTTTTGCCACTTCTGGGTTGTTGTATAGACAATGGGCTTTACCTCGTTTTCGAGCTATCCTCTAGAGGCTCTGTAGCTTCTCTTCTTCATGATGAGAATTTTCCTGCCGTGGAATGGAAAACGAGGCATAAGATAGCTCTTGGGACTGCACGTGGCCTCCACTACTTGCACAAGGGATGCCAGAGAAGGATAATCCACAGGGACATCAAGGCATCAAATATTCTATTGACTGAAGATTTTGAACCTCAGATATCTGATTTTGGACTGGCGAAATGGCTTCCTTCTCAATGGACTCATCATTCAATTGCCCCTATAGAAGGGACATTTGGGCACTTGGCTCCTGAGTACTATATGCATGGAATTGTGGATGAGAAGACAGATGTTTTTGCCTTTGGGGTGTTTTTACTGGAAGTCATCTCTGGGAGGAAACCTGTGGATGGGTCTCACCAAAGCTTACACAATTGGGCTAAACCAATATTGAACAAAAGGGAGATAGAAAAGCTGGTAGATCCAAGGCTTGAAGGGGCCTATGATGTGTCACAGTTAAAAAGGCTTGCCTTTGCTGCCTCTTTGTGCATCAGAGCATCTTCAACTTGGCGACCTACCATGAGCGAGGTCATAGAGGGGGAGGAGGAGGGAGAGATTGATAAAGAAAAGTGGAAAGTGCCAGAAGAAGAGGAGGAAGAAGAGGAGTACTGGGGTTTTGAGGATCTGGAATGTGAATATGACAGTTCTTTCTCAATATCTCTACCCAACTCAAATGGAAGTACTTAA 1101 0.4487 MKYIRTNSLKRLFSFKRRSFGEEKNVESFEIPPRPTWKCFSYEQLFNATNGFSIGNLVGKGGFAEVYKGKLEGGEEIAVKRLTQICSDERKEKEFLTEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHDENFPAVEWKTRHKIALGTARGLHYLHKGCQRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYMHGIVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHNWAKPILNKREIEKLVDPRLEGAYDVSQLKRLAFAASLCIRASSTWRPTMSEVIEGEEEGEIDKEKWKVPEEEEEEEEYWGFEDLECEYDSSFSISLPNSNGST 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1478 366 MobiDBLite consensus disorder prediction 317 337 - -
Glsi02g1478 366 FunFam Putative receptor-like serine/threonine-protein kinase 130 343 - -
Glsi02g1478 366 PANTHER OS08G0249100 PROTEIN 26 347 IPR046958 -
Glsi02g1478 366 Gene3D Transferase(Phosphotransferase) domain 1 130 341 - -
Glsi02g1478 366 ProSiteProfiles Protein kinase domain profile. 52 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1478 366 Gene3D Phosphorylase Kinase; domain 1 14 127 - -
Glsi02g1478 366 SMART serkin_6 52 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1478 366 SUPERFAMILY Protein kinase-like (PK-like) 32 317 IPR011009 -
Glsi02g1478 366 FunFam Putative receptor-like serine/threonine-protein kinase 19 128 - -
Glsi02g1478 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Glsi02g1478 366 Pfam Protein tyrosine and serine/threonine kinase 54 316 IPR001245 GO:0004672|GO:0006468
Glsi02g1478 366 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1478 Glsi-ChrGlsi02 13340686 13343315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1478 40 324 Trihelix Transcription Factor Family AT1G70460 43.390 1.10e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi02g1478 PK_Tyr_Ser-Thr 2.1e-41 CL0016