Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1472 ATGGCTATGGATTCGTCTCTAGAGGGTGTCACACTTGATCCATCTAAATGCAGTAAGTTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAACTATCTAAGTGGTCACATGGCGCATCAGAGATGCTACAGTCGTGGAGCCGTCAAGAGATTTTACAAGTCCTTTGTGCTGAGATGGGAAAAGAAAGAAAGTATACTGGGCTGACAAAGCTGAAAATTATAGAAAACCTTCTAAAAATTGTCTCTGAAAAGAAATCTGGTGGCCCTGAAATTGCAACAGATCTTGAACCACATTCTTCTACTGCACATGGCCAGAAGCCTACTAAAAGGCAGAGAAAAAATGATAATCCTTCTCGATTGCCTCTTCCAGCAAATGATGTTTCTGTTAATAATGGTGTTGGAGATGTAGGTAGCATCTCATACTGCAAAAACTCAGCCTGCAAAGCTACCCTAAGTGAAGCGGATGCATTTTGCAAAAGATGCTCGTGCTGCATTTGTCATCAATATGATGACAACAAAGATCCTAGCCTTTGGTTAATATGTGGCTCTGAGCCTCCATTTCTTGGTGTTTCTTGTGGCTTGTCATGCCATCTTGAGTGTGCTTTAAAGCATGATAATTCTGGCATTGCCAAAGATGGAAGATGTCCCAAGCTTGATGGAGGCTTCTATTGCATCTCTTGTGGGAAAGTGAATGATTTACTTGGATGCTGGAGAAAACAACTGATGGTGGCAAAGGATACCAGACGCGTGGACATACTATGCTATCGTCTTTCCTTAAGCCAAAGAATTTTACAAGGGACTGAAAAGTATAAAAAACTTTATGAAATCGTTGATGAGGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTGACTGGCTCACCAGCAAAGATTGGTAGGGGTATTGTGAACAGACTTTCATCAGGGCCTGATGTTCAGAAACTCTGTGGTTTGGCTTTGGAATCACTGGATTCTCTATCTACAAGGATCTTGCCTCCATCACCTAATCCAACAATTCAAGATACAAATTTGATTGCTCCAAATATGGTGAGGTTTGAAGATGTCACTGAAACATCCCTGACGGTGATTTTGGGTTATGAAGATCCTTCTGGGGAAAATATTAATGGCTGCTCCTTGTGGCATCGCAAGGCTCATGATGTGGACTATCCAGTTGACCCAACTTGTACTTTGCTTCTACCAAATAGAAGGTTCAGTATCAGGAATCTAATTCCTGCTACAGAATATAGTTTTAAAGTTGTTTCCTTTAGTGATTTAAGGGAGTTGGGTATGTATGAAGTGCGCATCTCAACGGAGCATGGCGAGGATGAAGTCCCTAATTGCTCAGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCATTCCAATCCTTCTTCAGTGGAAGATGAAACTAATAACAGTAACCCTTATAGTGATCAGACTGATGTTCGAACGGACAATTATCTTACTTATCACGAGGACACTGACAAGCTTGCTTCCGGAAATTTATCTAATGATGCTATTAAATGTTCCAACAAAAGTGGAGGGGAGCTTCCGGCAGATGCAGATTCTTTGTCAGACAAGCAACATGCTATAGGAATGGCTGTAACCATACCTGGTTCTGAAGTGCTAAGGCTTGAAAACAACCACTCACCAGAGGAACAAGTCACTGAGGACTTGAGCACTGATGATGGGTTGAATTCCCCTGTTCAGATTGGTAGGGAATGCGTGCCATTGTTACGTAGCTCAGAAGCAAGCTTGCCTATTACTCCCTGCAAGTTGGAAATACTTAAGGATGGGCCGGGAAGAAATGGGAGATCTAAATCCAGTGGCAATGATCCAGAAAATGGATCTGGGAAAAGAGAGGGCCCCCAAGATGGAAGCACATCTAAGAAGAGAAGTGGAGAAAGGCAAGATGAGGGTTGCGCTGCCAATGGGTCTTCAGATCGGGATTTTGAGTATTATGTGAAGATGATTAGATGGCTAGAATGTGAAGGACATATAGAAAAGAACTTCAGACAAAAATTCTTGACTTGGTACAGCCTGAGAGCAACACCACAAGAAGTAAAGATTGTGAAAGTATATATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAGCTTGTGGACACCTTCTCAGAATGTATATCAAACAAGAGACCATCCGTGGTGCCGGCTGGGTTCTGCATGAAGCTCTGGCATTGA 2217 0.4244 MAMDSSLEGVTLDPSKCSKLSMEEKRELVYELSKWSHGASEMLQSWSRQEILQVLCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGPEIATDLEPHSSTAHGQKPTKRQRKNDNPSRLPLPANDVSVNNGVGDVGSISYCKNSACKATLSEADAFCKRCSCCICHQYDDNKDPSLWLICGSEPPFLGVSCGLSCHLECALKHDNSGIAKDGRCPKLDGGFYCISCGKVNDLLGCWRKQLMVAKDTRRVDILCYRLSLSQRILQGTEKYKKLYEIVDEAVKKLEPEVGPLTGSPAKIGRGIVNRLSSGPDVQKLCGLALESLDSLSTRILPPSPNPTIQDTNLIAPNMVRFEDVTETSLTVILGYEDPSGENINGCSLWHRKAHDVDYPVDPTCTLLLPNRRFSIRNLIPATEYSFKVVSFSDLRELGMYEVRISTEHGEDEVPNCSATERSQSPVTNCSSHSNPSSVEDETNNSNPYSDQTDVRTDNYLTYHEDTDKLASGNLSNDAIKCSNKSGGELPADADSLSDKQHAIGMAVTIPGSEVLRLENNHSPEEQVTEDLSTDDGLNSPVQIGRECVPLLRSSEASLPITPCKLEILKDGPGRNGRSKSSGNDPENGSGKREGPQDGSTSKKRSGERQDEGCAANGSSDRDFEYYVKMIRWLECEGHIEKNFRQKFLTWYSLRATPQEVKIVKVYIDTFLEDPASLAEQLVDTFSECISNKRPSVVPAGFCMKLWH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1472 738 CDD PHD_VIN3_plant 162 227 - -
Glsi02g1472 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 738 IPR044514 GO:0010048|GO:0040029
Glsi02g1472 738 MobiDBLite consensus disorder prediction 439 485 - -
Glsi02g1472 738 MobiDBLite consensus disorder prediction 88 126 - -
Glsi02g1472 738 Pfam PHD - plant homeodomain finger protein 142 262 IPR032881 -
Glsi02g1472 738 MobiDBLite consensus disorder prediction 627 648 - -
Glsi02g1472 738 CDD FN3 346 424 IPR003961 GO:0005515
Glsi02g1472 738 Gene3D Immunoglobulins 343 444 IPR013783 -
Glsi02g1472 738 MobiDBLite consensus disorder prediction 597 648 - -
Glsi02g1472 738 ProSiteProfiles Fibronectin type-III domain profile. 346 442 IPR003961 GO:0005515
Glsi02g1472 738 SUPERFAMILY Fibronectin type III 346 424 IPR036116 GO:0005515
Glsi02g1472 738 MobiDBLite consensus disorder prediction 447 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1472 Glsi-ChrGlsi02 13254218 13259587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1472 3 475 PHD Gene Family AT4G30200 56.582 5.50e-174 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1472 02 13254218 13259587 Glsi02g1472 02 13254218 13259587 ECH