Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1471 ATGCATCAACACGCTATGGACTCTTCCTCTCCTTCTCCCCACAACTGGCTCGCTTTCTCTCTTTCCAATAACTCCTCTCACCCTTCTCCTCTTTCCCTTTTCCACTCCTTCAACTCTCCTACACCAGGCAGCACCATCGATGCATCGCCGGAGGTAACCGTCGGAGGCGGTGCAACCAACAACTTTTCCGTATTTGCCGGATGTCCCAAGTTCGAGGACTTTCTCGGCGGCTCCACCACCACATCCGCAACTGCACCACCCCCACCGCCTGCTTCCCATTTCTCCACCGTCAACGAGATATACGATTCTGGACTCAAAACGATACCGGCTAGCTTCCTCGGAGGACAAACCGAGCCTCAAAAACGGGCGCTGGCTCTAGCCGAGCCGTCCCCCAAGAAGTCCGGGGACACCTTCGGCCAACGCACCTCGATCTACCGCGGCGTCACACGGCATAGATGGACGGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAGAAGAGAGGGGCAAAGTAGGAAAGGAAGGCAAGGCACCCAAGAAGAAGCGGCAGAGGCATACGATATTGCAGCCATAAAATTTAGAGGATTAAACGCAGTCACCAACTTTGACATGAGCCGATACGACGTAAAGAGCATTGCCAATAGCAACCTTCCCATTGGGGGATTCTCGACCAAAGCCAAAAACTCATCAGATTCTTCTCTATCAGATCAGAGCAAAAGCCATGAGGGAAGAGGAGGATCAGATCATCATAATGACCCAGATATTATCTCTTCATCATCCTCAGTATCTACCTTTGCATCCCAAATACCCTTAAACTCTAATCTCAGCTTTGCCATACCCATCAAACAGGACCCCACTGCAGATTACTGGTCCTCCATTTTTGGGTACCCAAACTCTTCCAATTCCTATGGCACCACACTACCCTTCAATAACACCAGCAGCGAAAGCAACAATGGGTTTCTCGATGGAGGAATCTTTGGTGGAACTGGAGGCAGTAGCGTGGCTTCAAGTTCAATCCCATTGGCCACACCCATTGCCTTGAATAGTAATAGTAGTTATGAGAGTTCTTCTGGATATGGAAACTGGATTGTTGGAGGACCTACTCTGCACACATTCCAAACCCATGCAAAAGCCAGTCTCTTTCAGACGCCAATATTTGGCATGGAATGA 1173 0.4987 MHQHAMDSSSPSPHNWLAFSLSNNSSHPSPLSLFHSFNSPTPGSTIDASPEVTVGGGATNNFSVFAGCPKFEDFLGGSTTTSATAPPPPPASHFSTVNEIYDSGLKTIPASFLGGQTEPQKRALALAEPSPKKSGDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSNLPIGGFSTKAKNSSDSSLSDQSKSHEGRGGSDHHNDPDIISSSSSVSTFASQIPLNSNLSFAIPIKQDPTADYWSSIFGYPNSSNSYGTTLPFNNTSSESNNGFLDGGIFGGTGGSSVASSSIPLATPIALNSNSSYESSSGYGNWIVGGPTLHTFQTHAKASLFQTPIFGME 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1471 390 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 177 - -
Glsi02g1471 390 Gene3D AP2/ERF domain 144 206 IPR036955 GO:0003700|GO:0006355
Glsi02g1471 390 ProSiteProfiles AP2/ERF domain profile. 144 204 IPR001471 GO:0003700|GO:0006355
Glsi02g1471 390 SUPERFAMILY DNA-binding domain 143 206 IPR016177 GO:0003677
Glsi02g1471 390 SMART rav1_2 144 210 IPR001471 GO:0003700|GO:0006355
Glsi02g1471 390 MobiDBLite consensus disorder prediction 238 252 - -
Glsi02g1471 390 Pfam AP2 domain 144 196 IPR001471 GO:0003700|GO:0006355
Glsi02g1471 390 MobiDBLite consensus disorder prediction 225 260 - -
Glsi02g1471 390 CDD AP2 143 206 IPR001471 GO:0003700|GO:0006355
Glsi02g1471 390 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Glsi02g1471 390 PRINTS Ethylene responsive element binding protein signature 186 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1471 Glsi-ChrGlsi02 13204812 13207692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1471 130 390 AP2-EREBP Transcription Factor Family AT5G57390 37.329 7.13e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi02g1471 AP2 1.3e-08 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1471 02 13204812 13207692 Glsi02g1471 02 13204812 13207692 ECH