LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g1462	ATGGGAAACTGTTGCGGTCGTCAATCCGATTCTCAAAGTGGTTGTCCCAACTTCAACACTGCCGGCAACAACCAATTGGGGAGAAGCCAGCTACCCGTTAGACACAGTAATTCGAGATTATTGCAGAGTACTGGCAATTCTACTTTGCTTGGACACAGCAGCCAATCTGCAGGAAATAGCCGGCTATTTGGGCCAAATAGCAGTAATACATATACAACTAGCAATACTAGCACATCTTTTTTAGGCTCTGAAAACAGCCAAACCTCTCAAGTAAGAGGCGAAGACGAATTTCCTAATGGGCAGATCTTGGATGCTGCAAACCTGAGAGTTTTCAATTTGGAAGAACTGAAGGCAGCAACTAAAAGTTTTAGAGCTAATACAGTATTAGGAGAGGGAGGTTTTGGCAGAGTGTACAAGGGTTGGCTTAAAGAGAGAGCATCCTCAAATAGAGATGGAGGATTAATTATAGCCATTAAGAGATTGAATTCTGATAGCAGGCAAGGAGTTGAGGAATGGCAGTCAGAGGTAAATTTCTTGGGAAGGCTTTCTCATCCTAACCTTGTAAAGTTGCTTGGATTTGGAAGGGAAAATAGGGAGCTATTCCTAGTGTATGAATTCATGCACAAGGGCAGCTTGGCTAACCAGCTATTCGGAAGAGGTTCACATGTTCGTCCACTTTCATGGGACACAAGGTTAAAGGTTATGATTGGAGCAGCCAGAGGTCTAGCTTTCCTACACTCGCTAGAGAATAGAATCATATACAGAGATTTTAAGCCATCAAATATCCTCCTCGACAGGTTCTACACTGCCAAGTTAGCAGACTTTGGTTTGGCCAAAGGTGGTCCATCAGGCGATCAATCTCATGTGACAACAAGGGTTATGGGAACTCTAGGTTATGCGGCACCTGAGTACGTTGCCACAGGTCATTTGTCTGTGAAAAGTGATGTGTATGGATTTGGAATTGTTTTGGTGGAGATACTGACTGGCAAACAAATACATGATATAATACATCTTTGCGGGGAACGATCCTTCATTGAGGATTGGCTCAAATCAAATCTACTGAGCAAAGGTAAAATGAGAAACACAATGGACAGTCGATTGGAGGGGAAATATCCCCCCAAGTTAGCTTCAGAAATAGCTCAACTGGCTCTCAAATGTGTTCAAATGGAACATAAACTCAGGCCATCAATGCAAGAAGTTGTTGAAACATTGGAACAAGTAGAAGCGGTGAATGAAAAAACAACTGATAATAGGAAGCTGGCTACTCATTCTAGGGCAGCTCAATTTCATGGCCGGCCAGATGGAGGTTAA	1311	0.4302	MGNCCGRQSDSQSGCPNFNTAGNNQLGRSQLPVRHSNSRLLQSTGNSTLLGHSSQSAGNSRLFGPNSSNTYTTSNTSTSFLGSENSQTSQVRGEDEFPNGQILDAANLRVFNLEELKAATKSFRANTVLGEGGFGRVYKGWLKERASSNRDGGLIIAIKRLNSDSRQGVEEWQSEVNFLGRLSHPNLVKLLGFGRENRELFLVYEFMHKGSLANQLFGRGSHVRPLSWDTRLKVMIGAARGLAFLHSLENRIIYRDFKPSNILLDRFYTAKLADFGLAKGGPSGDQSHVTTRVMGTLGYAAPEYVATGHLSVKSDVYGFGIVLVEILTGKQIHDIIHLCGERSFIEDWLKSNLLSKGKMRNTMDSRLEGKYPPKLASEIAQLALKCVQMEHKLRPSMQEVVETLEQVEAVNEKTTDNRKLATHSRAAQFHGRPDGG	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g1462	436	Gene3D	Transferase(Phosphotransferase) domain 1	207	429	-	-
	Glsi02g1462	436	Coils	Coil	397	417	-	-
	Glsi02g1462	436	Pfam	Protein kinase domain	125	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g1462	436	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	252	264	IPR008271	GO:0004672\|GO:0006468
	Glsi02g1462	436	MobiDBLite	consensus disorder prediction	43	95	-	-
	Glsi02g1462	436	SUPERFAMILY	Protein kinase-like (PK-like)	104	404	IPR011009	-
	Glsi02g1462	436	MobiDBLite	consensus disorder prediction	413	436	-	-
	Glsi02g1462	436	ProSiteProfiles	Protein kinase domain profile.	123	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g1462	436	PANTHER	OS01G0588500 PROTEIN-RELATED	76	408	-	-
	Glsi02g1462	436	MobiDBLite	consensus disorder prediction	1	29	-	-
	Glsi02g1462	436	Gene3D	Phosphorylase Kinase; domain 1	107	206	-	-
	Glsi02g1462	436	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	207	419	-	-
	Glsi02g1462	436	FunFam	Serine/threonine-protein kinase BIK1	89	206	-	-
	Glsi02g1462	436	ProSitePatterns	Protein kinases ATP-binding region signature.	129	159	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g1462	Glsi-ChrGlsi02	12874107	12877658	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g1462	100	412	Receptor kinase-like Gene Family	AT4G02010	45.886	9.44e-86	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Glsi02g1462		Pkinase	6.3e-46	CL0016