Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1439 ATGAGTTTCCGCCCTACCTCTACTTCTCTTCATCCTCCTAGTCCCCCTGACGATCGGCATCTTCAACTCAACCTAGATCTTCTGCTTGAGCCATCTTCATTTTCATCTTCACCCACCAGTACTTACATCGAGCCTCGGATATTCTCATGCAACTATTGCCAAAGAAAATTCTACAGCTCGCAGGCCCTGGGAGGCCACCAAAATGCTCACAAGCTGGAAAGAACACTGGCCAAGAAGAGCAGGGAGCTTAACTCATCCATGCAAGGTTATGGGGTATCAGAGCAGAGATCGTCAAGCTTCAGTGGTTCGAACCATCTTGGGCTAGTGGGGTCACCACCTATTGGTGGGTTGGAGAATGAAGGACAAGCGGGAAGATTAGCTGCAAGGAGAGAGTTCAGCTATGGCTCCAAAGAAGGACCAGCTTCCTGGCCCAGGTCTAGTTATACGTCTGAAAATGTTCAGGAGGATATTAGTCAGATTGACTTGTCGTTAAGGCTTTGA 501 0.485 MSFRPTSTSLHPPSPPDDRHLQLNLDLLLEPSSFSSSPTSTYIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELNSSMQGYGVSEQRSSSFSGSNHLGLVGSPPIGGLENEGQAGRLAARREFSYGSKEGPASWPRSSYTSENVQEDISQIDLSLRL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1439 166 Gene3D Classic Zinc Finger 31 104 - -
Glsi02g1439 166 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g1439 166 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
Glsi02g1439 166 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 111 IPR044246 GO:0009788
Glsi02g1439 166 MobiDBLite consensus disorder prediction 85 104 - -
Glsi02g1439 166 MobiDBLite consensus disorder prediction 115 150 - -
Glsi02g1439 166 FunFam Zinc finger protein 2 29 95 - -
Glsi02g1439 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Glsi02g1439 166 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1439 Glsi-ChrGlsi02 12405945 12406445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1439 1 166 C2H2 Transcription Factor Family AT5G57520 47.674 2.03e-26 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g1439 None None None