Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1417 ATGGGTCGAGCTCCATGCTGTGACAAGGGCAACGTGAAGAAAGGACCTTGGTCTCCAGAAGAGGATGCTAAACTCAAAGCCTATATTGAAAATCATGGAACTGGAGGCAATTGGATTGCCCTTCCCCAGAAAATAGGGCTCAAGAGATGTGGAAAGAGTTGTAGACTTAGATGGTTAAACTATCTAAGGCCTAATATCAAGCATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGTAACCTCTACATAAGCATAGGAAGCAGGTGGTCTATTATTGCAGCCCAACTACCTGGAAGGACAGACAACGACATCAAGAACTACTGGAACACCAGGTTGAAGAAGAAATTACTTGGAAGGCGGAAACAGTCTAACAACGTCAATCCAAAAGACGCAAACGGAAACGAAATAGATGAGAACTCATCGTCGTCATATTCAAATGCCCTAAGCAACTCGGCTCTTGAACGACTTCAACTGCATATCCAACTTCAAAGCCTTCAAAATCAAAACCCTTTCTCTTTCTACAACAATCCTGCACTACTGTGGCCCAAGTCGCATCCTTTTCAACCAGAAAAGATCATGACTCAGATCAGCAGTGGGAGTTCTTCAAACCCTGTTCTTCAGAAAGAAGAATTCTACAAACCAACTGTTGCTGCTAACTCTCTCCAACAAGATGATGACAAGATCATCAATAGTACAAAGGTTTTTCTTTCTGATAATTCTATAAACACCTTGTCATCGATCTCGGATCCATTTAATCTTGCACCAAGAGCGGAGGGTAATATGGTAAATCACCAAGTTTCTGCACTGCAAGCTGAGCTGAATGACATTCTCAACAATAGAACAATGGCTTCCATGCCACAGGAGGAAGCTCAGATGGCTGATTTCGATTGTTTCGGAGAAATGAATAATTCAAAGGACAGCTTGATGTGGTGGTCCAATGATTTAGATACCAAATCAGCTTCCTCGAACTCCTGGGGTTCCACTAGTACTCCTCCTGTTCTTCAGCCAGAAGGGATGTTTCAAGACTACGAACTAGGTTACAGTTTGTAG 1053 0.4255 MGRAPCCDKGNVKKGPWSPEEDAKLKAYIENHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICNLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNNVNPKDANGNEIDENSSSSYSNALSNSALERLQLHIQLQSLQNQNPFSFYNNPALLWPKSHPFQPEKIMTQISSGSSSNPVLQKEEFYKPTVAANSLQQDDDKIINSTKVFLSDNSINTLSSISDPFNLAPRAEGNMVNHQVSALQAELNDILNNRTMASMPQEEAQMADFDCFGEMNNSKDSLMWWSNDLDTKSASSNSWGSTSTPPVLQPEGMFQDYELGYSL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1417 350 FunFam Transcription factor MYB36 70 141 - -
Glsi02g1417 350 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi02g1417 350 CDD SANT 71 113 IPR001005 -
Glsi02g1417 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi02g1417 350 MobiDBLite consensus disorder prediction 122 144 - -
Glsi02g1417 350 FunFam Transcription factor RAX3 7 68 - -
Glsi02g1417 350 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Glsi02g1417 350 MobiDBLite consensus disorder prediction 119 144 - -
Glsi02g1417 350 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Glsi02g1417 350 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Glsi02g1417 350 CDD SANT 16 62 IPR001005 -
Glsi02g1417 350 SMART sant 67 115 IPR001005 -
Glsi02g1417 350 SMART sant 13 64 IPR001005 -
Glsi02g1417 350 Gene3D - 7 68 - -
Glsi02g1417 350 PANTHER OS09G0431300 PROTEIN 1 330 - -
Glsi02g1417 350 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi02g1417 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi02g1417 350 Gene3D - 70 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1417 Glsi-ChrGlsi02 11880466 11881727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1417 1 229 MYB Transcription Factor Family AT5G57620 66.667 8.92e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g1417 Myb_DNA-binding 7.7e-14 CL0123