Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1413 ATGGGGTTTGCAAACAATATAGACAAGTATCGGCTCGGAAGGACAATTGGAGAAGGTACCTTCGCCAAGGTTAAGCTGGCTGTGAACAGCCAAAATGACCAGTATGTTGCCATTAAGGTCCAAAGAGAGATAAGAACAATGAAGCTTTTGCATCATCCCAACATTGTAAGAATTCACGAGACTTACGCCAAGAAGTTGAATGAAGGTGAGGCAAGGAAACTTTTTCAGCAACTTATTGATGCTGTGGACTACTGCCATAACAAAGGAGTATACCATAGAGATCTCAAGCCAGAAAACTTGCTTCTTGACAGCAAGGGAAATCTCAGAGTGTCCGATTTTGGACTAAGTGCTCTGCAAAAGGTAGCGCCTGTTCTCAAAATTTTATCATCACACATCTGGTCAAAAGATAGGGTACCGGGAAAGAAAGCTAATGATTGCATTCTATATGACATAACTTGTGACCCCAAAGCAGAATACACATGTCCACCATGGTTCACTGAAAGTCAAAAGAAACTAATTGCAAAACTACTCGAACCACGTCCTGGAAAGAGGATAACTATACCAAAGATTGTAGAAGATGAATGGTTTCAAATAGATTATGTGCCAGCTTGCGGATCTGAATGCGAAGAGAACACTTGCTTGGATGATGTTAATGCTGCTTTTGATTCAGTTGAGTTAGAGACAATACGCAAGTCCTCAAGTTTCATTAATGCTTTCCAACTAATAGCCATGTCTCAGGACCTCGATCTGTCAGGGCTTTTCGAAGAACAGGATCACAAAAAGCAGACAACAAGGCTTGGATCCAAGCACACCATCAATGAAACCATAGAAAAGATAGAAGCTGCTGCAACAGATATAAAAATGCACCCCAAACAGATGATGACTAGACGTTCCAGATCATATTTTGATCTATCAGCTAAGGTGATTGAAGTTGCTCCAACTCACTGTGTTGTAGAAATATCAGAATCTGCAGGAGATCTAAGAATGTACAATGAATTTTGTGAAAGTCTATCAAGTCTGCTGACAGAAAAATCTGGTGTGCCATCACAAACACAAGAGTCTGTAGAAGAATGCATCGCCGGCAAAAATAACCAAGATGCTGGGAGCTCTGAAGAGTCAAACTGTAAAGACATTAAAGGCCTTCGTGGCTATGCATCTGCTTGA 1164 0.4098 MGFANNIDKYRLGRTIGEGTFAKVKLAVNSQNDQYVAIKVQREIRTMKLLHHPNIVRIHETYAKKLNEGEARKLFQQLIDAVDYCHNKGVYHRDLKPENLLLDSKGNLRVSDFGLSALQKVAPVLKILSSHIWSKDRVPGKKANDCILYDITCDPKAEYTCPPWFTESQKKLIAKLLEPRPGKRITIPKIVEDEWFQIDYVPACGSECEENTCLDDVNAAFDSVELETIRKSSSFINAFQLIAMSQDLDLSGLFEEQDHKKQTTRLGSKHTINETIEKIEAAATDIKMHPKQMMTRRSRSYFDLSAKVIEVAPTHCVVEISESAGDLRMYNEFCESLSSLLTEKSGVPSQTQESVEECIAGKNNQDAGSSEESNCKDIKGLRGYASA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1413 387 Gene3D Transferase(Phosphotransferase) domain 1 65 124 - -
Glsi02g1413 387 MobiDBLite consensus disorder prediction 360 387 - -
Glsi02g1413 387 ProSiteProfiles NAF domain profile. 231 255 IPR018451 GO:0007165
Glsi02g1413 387 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 332 - -
Glsi02g1413 387 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Glsi02g1413 387 Gene3D Phosphorylase Kinase; domain 1 2 64 - -
Glsi02g1413 387 Gene3D Transferase(Phosphotransferase) domain 1 129 200 - -
Glsi02g1413 387 Pfam Protein kinase domain 64 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1413 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Glsi02g1413 387 Pfam NAF domain 234 288 IPR004041 GO:0007165
Glsi02g1413 387 ProSiteProfiles Protein kinase domain profile. 10 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1413 387 FunFam Non-specific serine/threonine protein kinase 231 345 - -
Glsi02g1413 387 SMART serkin_6 10 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1413 387 CDD CIPK_C 237 341 - -
Glsi02g1413 387 Gene3D Kinase associated domain 1, KA1 231 344 - -
Glsi02g1413 387 SUPERFAMILY Protein kinase-like (PK-like) 6 199 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1413 Glsi-ChrGlsi02 11774668 11777330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1413 64 342 CBL-interacting serine-threonine protein kinases AT5G57630 49.538 8.40e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi02g1413 NAF 2.8e-16 CL0573