Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1400 ATGGGTGGGCATTTGAGTTCAAGCCTGGTTGTGGCTGAGTTAATTGTCACACTTCATCATGTTTTCAACACTCCTCAAGACAAGATCATTTGGGATGTTGGTCATCAGGGATGTCAATTGCAACTTGCAAGAGACTTGAAAGGAAAGGACAACCATGTGATTTTAGTGATAGGTGATGGTGCCATGACAGCTGGACAAGCATATGAGGCAATGAACAATGCTGGTTTTCTTGGTACCAATTTCATTATCATCTTAAATGACAATAAACAAGTTTTTCTTCCCACCGCAACTGTCGATGGCCCAATTCCTCTGATGGGAGCTCTAAGCAAAGCCCTCACGAGCCTACAAATTAGTAGGAAGTTCCAGCAAATACGCGAGGCTGCCAAGGTATTTTGGAAAATGATATTATACTCCTATATGAGAGGGATGGTGGATGGTTCTGGTGCTTTTTTGTTTGAAGAACTTGGGTTGTACTATATTGGTCCGGTAGATGGGCATAATGTAGAAGACCTTGTTCACATCATGAAAAAAATTAAAGATATGCCAGCACTGGTACCTGTTCTACTTCATGTCATCACCGAGAAAGGAAAAGGCTATTGTCCAGCTGAAGATGCACCTAACAAAATGCACGAAGCTGAAACTGATGACAGAATTGTTGCAATCCATGCTGCAATGGGAGGTGGAACTGGACTTAACTTATTTCAAAAGCGCTTCCCTGAACAATGTTCTGAAGTTGGGATAGCAGAACAACATGTTGTTATTTTCACAGCGGGCCTTGCTATTGAAGGCTTTAAGCCCTTTTGCGCAATATACTCATCTTTTCTTCAAAGACGCTTTGATCAGCACATCCTTCAAAAGCTTCCAGTTAGATTTGCAAAAGACAGAGCTGGCCTTATTGGTGCTGATGGTCCAACTCATTGCGGAGCCTTTGACACTACATTCATGGCTTGTTTGCCAAACATGGTGGTTGGGAAAGGAAGGGTATTGAAGGAGGGAAGCAAGGTGGCGCTTGTTGGTTATGGAACAATGGTTCAAAACTATATGGCAGCAGCAGAACTTCTTGAAGCTCAAGGCATTTCAACAACTGTGGCTAATGCAAGATTTTGATCTATTGGAGAATTTTGTTCTCATGTTTCTTATTTCCTAAACCTTAATGGGCTGCTTGATGGAAATCTCAAGAAAAACCCACACCGAGCAAATCATAATCTTCGAAATCGTTTCGTTTCGGACCCTTCCACTCCTGAAAGGGCTCTTATTAGCATCGAAGCAGAAAAAAGAAAGCACCCGGAGGCTGTAGCTATTACAGTAGCAAACAGAAGAGAAGAGAGAGTGTGTGTGTGTGTGTGTGTTTTGGAGATGAGAATTGAGAGAGGAGGCTTGAAGGGCTTAAGGGGTGGGTGGAGCGTGGCGGCTAAGCCATGCGACTCCTGCAAATCGGCTGCCTCGGCGGTGTTCTGCCGAGTCGATTCAGCCTTCTTATGTATGGCTTGTGATAACAGAATCCACTGCGCCAATAAGCTGGCTTCCCGCCATGAGCGTGTGTGGATGTGCGAGGTGTGCGAACAGGCCCCTGCTGCCGTCACGTGCAAGGCCGACGCCGCTGCTCTCTGCGTCGCGTGCGATTCTGATATCCACTCGGCTAACCCACTTGCCCGCCGCCACGAGAGGGTGCCGGTGGAGCCCTTCTTCGACTCCGCCGAGTCCATGGTGAAATCCTCTGCTACTGCTGCTTTTAACTTCTTCGTTCCGACCGATACTGGAATTGGCTCCGATGGCTTCCACCACGAAGATCCCGAAGCAGCGACGTGGCTGCTTCCCAACCCGAATTTCAGTTCCAAGCTCGTGGATGCTCCGGAAATCAAGTCAGGGGATATTTTCTTCTCGGAAATGGATCCAATTTTGGATTTCGATTACTCCAATTCATATCAGAATAATAATCACAACGCGGGGAACGATAGCGTAGTGCCTGTTCAAACCAAACCTGCTCTGACTCCGGTGATAAATCAATCTGAAAGTTGCTTCGACATCGATTTTTGCAGGTCGAAGCTCTCTTCATTTAGCTACCCAAGTCAAAGCGTTTCATCGTCTTCCGTTGACGTTGGGATAGTGCCAGAGGGTAATTCCGTGTCAGAAATATCATACTCTTTCGGGCGAAACATGAGCAACAGTTCCGAATCGGGTGGAATCGGGTCGGGTAATAACCAAGCGACTCAACTGGGCGGTATGGACCGGGAAGCTAGGGTGTTGAGATACAGAGAAAAAAGGAAGAACAGGAAATTCGAGAAAACCATACGCTACGCTTCGCGAAAAGCGTATGCAGAGACCCGGCCGAGAATCAAGGGGCGGTTCGCGAAACGGACCGAAACAGAATCGGAGGTGGACCGACTCTATAGCCCTGCCGGCACCGCGGGTCTTATGGTGGATGTTCAGTACGGCGTCGTGCCGTCTTTTTAA 2454 0.4715 MGGHLSSSLVVAELIVTLHHVFNTPQDKIIWDVGHQGCQLQLARDLKGKDNHVILVIGDGAMTAGQAYEAMNNAGFLGTNFIIILNDNKQVFLPTATVDGPIPLMGALSKALTSLQISRKFQQIREAAKVFWKMILYSYMRGMVDGSGAFLFEELGLYYIGPVDGHNVEDLVHIMKKIKDMPALVPVLLHVITEKGKGYCPAEDAPNKMHEAETDDRIVAIHAAMGGGTGLNLFQKRFPEQCSEVGIAEQHVVIFTAGLAIEGFKPFCAIYSSFLQRRFDQHILQKLPVRFAKDRAGLIGADGPTHCGAFDTTFMACLPNMVVGKGRVLKEGSKVALVGYGTMVQNYMAAAELLEAQGISTTVANARFXSIGEFCSHVSYFLNLNGLLDGNLKKNPHRANHNLRNRFVSDPSTPERALISIEAEKRKHPEAVAITVANRREERVCVCVCVLEMRIERGGLKGLRGGWSVAAKPCDSCKSAASAVFCRVDSAFLCMACDNRIHCANKLASRHERVWMCEVCEQAPAAVTCKADAAALCVACDSDIHSANPLARRHERVPVEPFFDSAESMVKSSATAAFNFFVPTDTGIGSDGFHHEDPEAATWLLPNPNFSSKLVDAPEIKSGDIFFSEMDPILDFDYSNSYQNNNHNAGNDSVVPVQTKPALTPVINQSESCFDIDFCRSKLSSFSYPSQSVSSSSVDVGIVPEGNSVSEISYSFGRNMSNSSESGGIGSGNNQATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTETESEVDRLYSPAGTAGLMVDVQYGVVPSF 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1400 817 CDD TPP_PYR_DXS_TK_like 212 323 - -
Glsi02g1400 817 CDD Bbox1_BBX-like 473 516 - -
Glsi02g1400 817 ProSiteProfiles Zinc finger B-box type profile. 469 516 IPR000315 GO:0008270
Glsi02g1400 817 Pfam Transketolase, C-terminal domain 324 369 IPR033248 -
Glsi02g1400 817 ProSiteProfiles Zinc finger B-box type profile. 512 559 IPR000315 GO:0008270
Glsi02g1400 817 SMART Transket_pyr_3 197 368 IPR005475 -
Glsi02g1400 817 Pfam B-box zinc finger 514 559 IPR000315 GO:0008270
Glsi02g1400 817 SUPERFAMILY TK C-terminal domain-like 323 369 IPR009014 GO:0003824
Glsi02g1400 817 ProSiteProfiles CCT domain profile. 744 786 IPR010402 GO:0005515
Glsi02g1400 817 SMART bboxneu5 469 516 IPR000315 GO:0008270
Glsi02g1400 817 SMART bboxneu5 517 559 IPR000315 GO:0008270
Glsi02g1400 817 ProSitePatterns Transketolase signature 2. 300 316 IPR020826 -
Glsi02g1400 817 Pfam CCT motif 744 786 IPR010402 GO:0005515
Glsi02g1400 817 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 2 37 IPR005477 GO:0008661|GO:0016114
Glsi02g1400 817 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 2 260 IPR029061 -
Glsi02g1400 817 CDD Bbox1_BBX-like 517 559 - -
Glsi02g1400 817 Gene3D - 325 371 IPR009014 GO:0003824
Glsi02g1400 817 Pfam Transketolase, pyrimidine binding domain 211 323 IPR005475 -
Glsi02g1400 817 Gene3D - 1 39 - -
Glsi02g1400 817 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 40 193 IPR005477 GO:0008661|GO:0016114
Glsi02g1400 817 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 2 37 IPR005477 GO:0008661|GO:0016114
Glsi02g1400 817 Gene3D - 208 324 - -
Glsi02g1400 817 Gene3D - 40 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1400 Glsi-ChrGlsi02 11515819 11527888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1400 460 817 C2C2-CO-like Transcription Factor Family AT5G57660 57.027 1.98e-123 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi02g1400 DXP_synthase_N 4.3e-34 CL0254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1400 02 11515819 11527888 Glsi02g1400 02 11515819 11527888 ECH