Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1399 ATGATGCTTTCTTCCCCTGCAAAAATACTAATTGGCCTCTCCTTAGACCCAGAAGAGAGCAAAGAGCTTCTCTCGTGGGCAATTAGAGTTCTGGCCCATCCAAATGACACCATTGTGGCTCTGCATGTTCTTGTCGCTGAGGATAAGAAGAAGAAGCGTGCCTCAGTCACAAGAAGGCAATCCCAACTTCGGCAGGCAAAAGCCAATGTTATATCTGTTCTTGCTGAATTCGCAGGGACTTGTTGGTCTAAGCAGGTTAATTTGGAAGCCAAAGTGGCATTCAGTTCCAAAGTTGGTGGGGGTTTGGTCGAAGAAGCCAAGTCCATCTCTGCTGACTTTCTCCTTCTTCGTGGCTCAAGAAACCAATCTAAAAAGATTAAGGCTTCTAATGGCATCACCAAGTATTGCTTTGAACATGTTTATGAAGGCTGCTCGGTGGTCTCTGTTGGAAAATCTGCAAAAGCGCAGAAAAACTCCAACTTCAATTTTACACATTCTCAAGGTAATCGTGAACCAGGCTCAAGGGGGTTTAAGAAGGAGAACCAAAGAGACAGGGCAGGGTCCCCTGTTTTGAAGGAGTTTATTTCAGACTCAAAGACACAAACCCGTTCACCAAGAACGGTGCTGGATGCACTGGAAGGACAATCTAACAGCACAGAAGATGATACATTTAGCACTAGGGTCTCAAGCATCACAGAAACCCCTTCGGTGGCTCCTAAGATCAAAAGCCAATCCAAGTTGAGGAATCCACGATCGCCTTTCAGACTCATAGCCTCATTCCTCGGTTCACCATTGAGAAGAAAAAACAGATCCAGAAATGAGAAGAGGCAGCCTCTGTTAAAGTGCTTTAGCTATGAGGAGATCTCCAATGCTACAAATGGCTTCCACCAAGATTATTTGGTAGGACGAGGTGGGTACTCTGAAGTATACAGAGGAGATCTTTCTGATGGTAAAACCATTGCTGTGAAGAGGTTGGCGAAGGACAACAAGAATCCTAATAAGGAAAAGGAGTTCCTTATGGAATTGGGAGTAATTGGACATGTCTGTCATCCTAATACTGCAACTTTAGTTGGATGTTGCATTGAAAATGGACTCTACCTGGTTTTCAAGTACTCCCAGAATGGAAACTTGGCAACCGCATTGCATGATCATGAACCACAGGCAAAGCCTCACATGGAATCAGGCAACATTAGGGAGCTGGCCGATCCAAAAATGGAAGGTAGATATGATGAAGAGCAATTGCACAGGGTTGTGCTGACTGCTTCATACTGTGTGAGACAATCTGCCATATGGCGACCCCCAATGAGCGAGGTGTTGGAACTACTAACCAATGGCCAAGACTCTGAGGTTGGAAAGAGCTGGAGGATCCCCAAGTTCACTTCTGATGAGTTGGATGATTACTCTATGATTTTTGGATATGAAGTCCCGTCAGACATATCTTTAGAAGATTATTTATACACTGATTCTTCAAAAACAAAATCTATTATGTCTGGCATGACATGA 1503 0.4418 MMLSSPAKILIGLSLDPEESKELLSWAIRVLAHPNDTIVALHVLVAEDKKKKRASVTRRQSQLRQAKANVISVLAEFAGTCWSKQVNLEAKVAFSSKVGGGLVEEAKSISADFLLLRGSRNQSKKIKASNGITKYCFEHVYEGCSVVSVGKSAKAQKNSNFNFTHSQGNREPGSRGFKKENQRDRAGSPVLKEFISDSKTQTRSPRTVLDALEGQSNSTEDDTFSTRVSSITETPSVAPKIKSQSKLRNPRSPFRLIASFLGSPLRRKNRSRNEKRQPLLKCFSYEEISNATNGFHQDYLVGRGGYSEVYRGDLSDGKTIAVKRLAKDNKNPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLVFKYSQNGNLATALHDHEPQAKPHMESGNIRELADPKMEGRYDEEQLHRVVLTASYCVRQSAIWRPPMSEVLELLTNGQDSEVGKSWRIPKFTSDELDDYSMIFGYEVPSDISLEDYLYTDSSKTKSIMSGMT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1399 500 CDD USP_Like 8 149 - -
Glsi02g1399 500 Gene3D Phosphorylase Kinase; domain 1 259 367 - -
Glsi02g1399 500 PANTHER OS08G0249100 PROTEIN 388 455 IPR046958 -
Glsi02g1399 500 Pfam Protein tyrosine and serine/threonine kinase 300 390 IPR001245 GO:0004672|GO:0006468
Glsi02g1399 500 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Glsi02g1399 500 ProSiteProfiles Protein kinase domain profile. 295 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1399 500 Gene3D HUPs 2 149 IPR014729 -
Glsi02g1399 500 FunFam Putative receptor-like serine/threonine-protein kinase 264 371 - -
Glsi02g1399 500 Gene3D Transferase(Phosphotransferase) domain 1 368 456 - -
Glsi02g1399 500 SUPERFAMILY Protein kinase-like (PK-like) 281 386 IPR011009 -
Glsi02g1399 500 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 116 - -
Glsi02g1399 500 MobiDBLite consensus disorder prediction 172 187 - -
Glsi02g1399 500 MobiDBLite consensus disorder prediction 159 248 - -
Glsi02g1399 500 MobiDBLite consensus disorder prediction 194 248 - -
Glsi02g1399 500 Pfam Universal stress protein family 8 122 IPR006016 -
Glsi02g1399 500 SMART tyrkin_6 295 442 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1399 Glsi-ChrGlsi02 11488141 11492527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1399 283 393 Receptor kinase-like Gene Family AT1G53430 43.750 2.78e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi02g1399 PK_Tyr_Ser-Thr 1.3e-12 CL0016