LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g1398	ATGGGATCCAACCTCAGTTGCTGTGGTTCAGACAAGGTCGAAGAATTGCCAGTTGTTGTCAACAGTTCATGGAGAATATTCACATACAAGGAGTTGCATACAGCTACCAACGGTTTTAGTGAGGATTATAAACTTGGTGAAGGTGGCTTTGGAAGTGTCTACTGGGGAAAAACCAACGATGGTCTCCAGATAGCGGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTCGCAGTGGAAGTTGAAGTTCTTGGAAGGGTTCGGCACAAGAATTTACTGGGGCTTAGGGGCTATTGTGCTGGGGATGATCAACGGCTCATAGTCTACGATTACATGCCAAATCTGAGCCTCCTTTCTCATCTCCATGGCCAATTTGCTGGGGACGTGCAGCTGGACTGGAAAAAGAGAATGAACATCGCAATTGGCTCCGCCGAAGGCATATTGTACTTGCATCACGAGGTTACACCACACATCATCCATAGGGACATCAAGGCAAGCAATGTTCTCTTGAATTCAGACTTTGAGCCTCTAGTTGCTGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGAGTTAGCCATCTTACTACCCGAGTTAAGGGCACTTTGGGGTACTTGGCTCCTGAATATGCTATGTGGGGAAAAGTTTCTGAAAGTTGTGATGTTTATAGTTTTGGGATTCTTCTATTAGAGCTAGTAACTGGAAGAAAACCCATAGAAAAGCTCCCAGCAGGAGTGAAGAGAACTATAACTCAGTGGGCTGAGCCTCTGATAAGCAAACGGAGGTTTAGGGATATGGTGGATCCAAGGCTAAGAGGGAACTTTGATGAGAATGAAGTGGAACAAGTCATCAATGCGGCTGCACTTTGTGTGCAAAGTGAGCCTGAGAAGCGACCCACCATGAAGCAAGTGGTGAACATTCTGAGAGGATATGAAGCAGATCATGGGATGGTGACGAAGATGAGGATGGACAGTGTGAAGTATAATGAAGAACTTTTGGCACTTGATCAAGCTAGTGACGATGATGATGAGGATGGAACCAATGGTTATGGGGTTTTTAGTGCCCTTGAGGTTCAGAAGGTGCATGTTCCTCACAAGAAAATGGCTAGACCTCTTTGA	1125	0.4524	MGSNLSCCGSDKVEELPVVVNSSWRIFTYKELHTATNGFSEDYKLGEGGFGSVYWGKTNDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGDDQRLIVYDYMPNLSLLSHLHGQFAGDVQLDWKKRMNIAIGSAEGILYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPAGVKRTITQWAEPLISKRRFRDMVDPRLRGNFDENEVEQVINAAALCVQSEPEKRPTMKQVVNILRGYEADHGMVTKMRMDSVKYNEELLALDQASDDDDEDGTNGYGVFSALEVQKVHVPHKKMARPL	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g1398	374	CDD	STKc_IRAK	45	310	-	-
	Glsi02g1398	374	SMART	serkin_6	39	309	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g1398	374	FunFam	PTI1-like tyrosine-protein kinase At3g15890	115	328	-	-
	Glsi02g1398	374	SUPERFAMILY	Protein kinase-like (PK-like)	19	310	IPR011009	-
	Glsi02g1398	374	FunFam	PTI1-like tyrosine-protein kinase At3g15890	12	114	-	-
	Glsi02g1398	374	Gene3D	Transferase(Phosphotransferase) domain 1	115	327	-	-
	Glsi02g1398	374	Pfam	Protein tyrosine and serine/threonine kinase	43	310	IPR001245	GO:0004672\|GO:0006468
	Glsi02g1398	374	PANTHER	OS01G0253100 PROTEIN	22	315	-	-
	Glsi02g1398	374	ProSitePatterns	Protein kinases ATP-binding region signature.	45	68	IPR017441	GO:0005524
	Glsi02g1398	374	ProSiteProfiles	Protein kinase domain profile.	39	320	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g1398	374	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Glsi02g1398	374	Coils	Coil	59	79	-	-
	Glsi02g1398	374	Gene3D	Phosphorylase Kinase; domain 1	10	114	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g1398	Glsi-ChrGlsi02	11481124	11484688	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g1398	18	351	Trihelix Transcription Factor Family	AT1G70460	43.923	9.39e-96	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Glsi02g1398		PK_Tyr_Ser-Thr	1.7e-43	CL0016