Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1380 ATGCTTTCGAAATCTTGCTTAGACCTATTGAGTTTGGTCTCCATCGATGATTACCGGGCTCTGAGTCGGATCCCCAGGGTCATGACGGTCCCCGGAGTTATATCAGAGTTAGAAATCGCAGAAGCCGACCGTGCCAATTCTGGGTGCGGATCAGACGACGACGTTTCTTCAACTCCACAAGAGCGCAGGATCATAGTCGCTAACCAGTTGCCTATACGGGCTTTTCGCGACGGCGAGACCAAGAAATGGGCCTTCGAATTGGACAGTGATAGTTTAGTTCTGCAGCTCAAAGATGGGTTTCCCTCGAACGTCGAAGTTTTGTATGTGGGTTCCTTGAAGGCCGAGATCGACGCGTCAGAACAAGACGAAGTGGCTCAAGTCTTGCTTGATAAGTTCCGGTGCGTTCCAACCTTCTTGCCCTTCGAAATCCAGAACAAGTTCTACCATGGCTTCTGCAAGCATTACCTTTGGCCTCTGTTTCACTATATGTTGCCCATGTCGCCTAGCCACAGCGCTCGTTTCGACCGCTCGCAGTGGCAGGCTTATGTATTGGCCAACAAAATTTTCGCAGATAAGGTAACGGAGGTGATAAACCCAGAGGAGGATTATGTTTGGGTCCATGACTATCATCTCATGGTCTTGCCTACCCTATTGAGGAAACGGTTCCACCGGGTTAAGCTTGGGTTCTTTTTACATAGCCCATTTCCGTCTTCAGAAATCTATAGAACTATTCCCGTTCGCGATGATATCCTTCGGGCCTTTTTGAATTGTGATTTAGTCGGATTTCACACATTTGATTACGCTCGACATTTCTTGTCCTGTTGTAGTAGGATGTTGGGTCTTGATTATGAGTCCAAGAGGGGTTACATTGGACTAGATTATTATGGTCGAACCGTGACGATTAAGATCTTGCCAGTTGGAATTCACATGGGTCAGCTCGAATCGGTCTTGTCCTTGTCTCAGACTGCCGAGAAGATTAAGGAATTGAAGAAACGATTTGAGGGGAAAATTGTGATCTTGGGCGTGGACGACATGGATTTGTTCAAAGGTATTAGCTTGAAGTTCTTAGCAATGGGGCAGCTTTTGGATTTGCACCAAGAGTTAAGAGGTCGAGTGGTTTTAATTCAGATTCTTAACCCAGCTAGAAGCAGAGGAAAAGATATTCAAGATGTTCAGAACGAGACCGATGCTATTGCCAACGACATAAACAAAAGATACGGCAAACCAGGGTACCAGCCAATCATCTTCATAAACGGCCCAGTTTCAACGCAGGAAAAAGCAGCCTATTACGCCATTTCTGAATGCTGCGTTGTAAATGCTGTGAGAGATGGGATGAACTTGGTGCCTTATAAGTACACTGTTTGTAGACAGGGCAGTCTTGTTTTGGACAAGGCACTCGTAAGCGACGATGATGATTCGGAAAAGCCTAAACGGAGTGTCCTCATCGTGTCGGAATTCATCGGGTGCTCGCCATCTCTGAGCGGAGCGATCCGGGTGAATCCTTGGAACATCGATGATGTCTCAGAGGCCATGAATTTGGCTATCACGATGCCACAGGCAGAGAAGCATTTGCGCCATGAGAAGCATTATAAGTACATTAGCTCCCACGATGTGGCTTATTGGACTCGGAGTTTTGATCAGGACTTAGAGAGAGCTTGTAGAGAGCATTACCTCAAGAGATCTTGGGGTGTTGGGTTAGGATTGGGATTCAGAATTGTTGCTCTGGATCCTACGTTTAGGAAGCTTTCATTGGAAAACCTTGTCTCTGCGTACAGACGCACAGAGAATCGTTTGATCCTTCTGGACTATGATGGTACTATGTTGCCACAAGGCTCAATCGACAAAACTCCAGGCAACGAGGTTATTTCTGTGTTGAATTGTTTATGTAGTGATCCTAAAAACGTAGTGTTCATTGTGAGCGGCAGAGACAAAAAGTGCCTGAGCAAGTGGTTCTCCCCATGTGAGAAGCTGGGTCTCTCGGCCGAACATGGTTACTTCACTAGGTGGAGTAGGGATTCTGCTTGGGAGACCTGTGGATTGACGATGGATTTTGATTGGAAAAAGATTGCAGAACCTGTGATGGAACATTACACAGAAGCCACTGATGGTTCTTTCATTGAACAAAAGGAAAGTGCACTGGTTTGGCACCATCAGGAAGCTGACCCTCATTTTGGATCATGCCAGGCCAAAGAGCTTCTAGATCACCTAGACAGTGTGCTTGCCAATGAACCAGTAGTTGTTAAAAGAGGACAACACATAGTGGAAGTAAAACCCCAGGGTGTGAGCAAAGGTATGGTAGTCGAAAACGTGATCTCAAGGATGACAAGCGAGGGAAAATCACCAGATTTTCTGCTGTGCATAGGAGATGATCGGTCAGATGAAGATATGTTTGAGAGCATTGCTCGCCCAGTTTGTAATAATCCAATCCTGCCTGCCATAGAAGAGGTGTTTGCATGCACAGTTGGTCAGAAACCCAGCATGGCAAAATACTATCTCGACGATACTTCTGAAGTTATCAAATTGCTCCGAGGAGTTGCCACCGATCCCCAAAATCTATACACCATCAGGAATTCCAAGGATCTTTATAGATACAAATTAGAAATCTGA 2607 0.4591 MLSKSCLDLLSLVSIDDYRALSRIPRVMTVPGVISELEIAEADRANSGCGSDDDVSSTPQERRIIVANQLPIRAFRDGETKKWAFELDSDSLVLQLKDGFPSNVEVLYVGSLKAEIDASEQDEVAQVLLDKFRCVPTFLPFEIQNKFYHGFCKHYLWPLFHYMLPMSPSHSARFDRSQWQAYVLANKIFADKVTEVINPEEDYVWVHDYHLMVLPTLLRKRFHRVKLGFFLHSPFPSSEIYRTIPVRDDILRAFLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPVGIHMGQLESVLSLSQTAEKIKELKKRFEGKIVILGVDDMDLFKGISLKFLAMGQLLDLHQELRGRVVLIQILNPARSRGKDIQDVQNETDAIANDINKRYGKPGYQPIIFINGPVSTQEKAAYYAISECCVVNAVRDGMNLVPYKYTVCRQGSLVLDKALVSDDDDSEKPKRSVLIVSEFIGCSPSLSGAIRVNPWNIDDVSEAMNLAITMPQAEKHLRHEKHYKYISSHDVAYWTRSFDQDLERACREHYLKRSWGVGLGLGFRIVALDPTFRKLSLENLVSAYRRTENRLILLDYDGTMLPQGSIDKTPGNEVISVLNCLCSDPKNVVFIVSGRDKKCLSKWFSPCEKLGLSAEHGYFTRWSRDSAWETCGLTMDFDWKKIAEPVMEHYTEATDGSFIEQKESALVWHHQEADPHFGSCQAKELLDHLDSVLANEPVVVKRGQHIVEVKPQGVSKGMVVENVISRMTSEGKSPDFLLCIGDDRSDEDMFESIARPVCNNPILPAIEEVFACTVGQKPSMAKYYLDDTSEVIKLLRGVATDPQNLYTIRNSKDLYRYKLEI 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1380 868 FunFam Alpha,alpha-trehalose-phosphate synthase 316 534 - -
Glsi02g1380 868 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 596 713 - -
Glsi02g1380 868 CDD HAD_TPP 598 840 - -
Glsi02g1380 868 Pfam Trehalose-phosphatase 600 836 IPR003337 GO:0003824|GO:0005992
Glsi02g1380 868 CDD GT20_TPS 62 550 IPR001830 GO:0003824|GO:0005992
Glsi02g1380 868 NCBIfam HAD-IIB family hydrolase 598 799 IPR006379 -
Glsi02g1380 868 NCBIfam trehalose-phosphatase 596 844 IPR003337 GO:0003824|GO:0005992
Glsi02g1380 868 Gene3D - 726 855 IPR023214 -
Glsi02g1380 868 Gene3D - 596 712 IPR023214 -
Glsi02g1380 868 Gene3D Glycogen Phosphorylase B; 54 314 - -
Glsi02g1380 868 Pfam Glycosyltransferase family 20 62 550 IPR001830 GO:0003824|GO:0005992
Glsi02g1380 868 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 62 554 - -
Glsi02g1380 868 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 25 846 IPR001830 GO:0003824|GO:0005992
Glsi02g1380 868 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 726 857 - -
Glsi02g1380 868 Gene3D Glycogen Phosphorylase B; 315 534 - -
Glsi02g1380 868 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 55 314 - -
Glsi02g1380 868 SUPERFAMILY HAD-like 597 843 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1380 Glsi-ChrGlsi02 11011881 11014827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1380 1 847 Trehalose Biosynthesis Gene Families AT2G18700 67.727 0.0 1207