Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1372 ATGGGTAGAAGTTTTCTGCTAGGCGAACCTCCTTCTGAGCAACCACTATATTTTCTTTCTCAGCCAAACCTGGTACCTTCACCACCCAGTGTTCGATCTGATGGTTTCAATTTAAACGACAAGGTCAGTCCAAGCATACTGCTCATCATTATTATCCTCGCAATTGTTTTCTTCGTTTCTGGTTTGCTCCACCTACTCGTTAGATTCCTCTGGAGACCTCAAAGCAGAGACCCAGATGATTTGGATAATGTGACTGCTCTCCAAGGGCAACTGCAGCAACTCTTCCACCTTCACGATGCTGGGGTTGACCAGTCCTTCATAGACACCCTCCCTGTCTTCCATTACAAAGCTATTATAGGATTGAAGAACCCATTTGATTGTGCTGTGTGTTTGTGTGAATATGAACCTGAGGATAAGCTCAGATTGTTACCAAAATGTAGCCACGCCTTTCACATGGACTGTATAGATACCTGGCTCTTGTCCCACTCTACTTGCCCTCTTTGTAGAGCTAGCTTGCTCCCTGATTTATCTCCAACCAGTAGTTTGTCTCCCTTTGTCTTTGTTCTAGAATCTGGGAGTGAGAGTTCAAGGGAAATTGTTTCAGAGGCTCGGACTAGTTCTGGAATTACAACAAATTCTCGTCTGGGTTGCCATGGAGACACCGAATTTGGATCAACGCGGATCGATTTATTGCACAAATCGGGTGATTTAACTTCAGATAACAATCCTGAATCAACCATGGTTGGTGAATCGCAGGAAAAAGTGGTTACTGTTAAGCTGGGAAAGTTCAGGAATGTGGATGGTGGAGGAGAAGGAAGTAGTGCCAACATTGCAGATGCTAGAAGGTGCTTTTCTATGGGGTCATTTGCTTATGTTATGGACGAGGATTCTTCACTTCAGGTACCCATTAGAGCCACGATCAAGAAGCAACCAAGCAAGAAGCCTACTTTGCCTTTAACTCCAGGACGCAGGATTGCCATGTCCGAATGTGACTATGAATCCGGAAGAGACTTCAAATTCACAGGCTTTGACGGAACAAGAAGTGTTGACACTTCTGGAATTGGAAGTACTGGGGCTGCTATTGGGAGTAGCAGAAAAGAGAGTTTTTCAATCTCAAAGATTTGGCTCCGGGGAAAGAAGGATAAGCCAAACCCAGCGGCGGAATCGTCAAGAAGGGCTGTTTCGTTTCGGTTTTCACGGCAGCATAACGTCGTTTCATCTGACGATTCTAAGGCCAAGAATGGAAAATTTGACACAAGCAGTACTAAATCTGAGATGGATTTTGGGAAATGGGAAAATGGAGGAAGTGTGTTTGGATATGATGAGGAAAACCAGAGCTGCTATAGTATGGATTCTCAGGCCAGAGCTCCCTCTTTTGCAAGAAGAACCCTGCTTTGGCTAACTGGAAGACAGCACAAGGTTGTCCACTCATCCTCTGCTTCCAACTTCTAG 1452 0.449 MGRSFLLGEPPSEQPLYFLSQPNLVPSPPSVRSDGFNLNDKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPQSRDPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEYEPEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRASLLPDLSPTSSLSPFVFVLESGSESSREIVSEARTSSGITTNSRLGCHGDTEFGSTRIDLLHKSGDLTSDNNPESTMVGESQEKVVTVKLGKFRNVDGGGEGSSANIADARRCFSMGSFAYVMDEDSSLQVPIRATIKKQPSKKPTLPLTPGRRIAMSECDYESGRDFKFTGFDGTRSVDTSGIGSTGAAIGSSRKESFSISKIWLRGKKDKPNPAAESSRRAVSFRFSRQHNVVSSDDSKAKNGKFDTSSTKSEMDFGKWENGGSVFGYDEENQSCYSMDSQARAPSFARRTLLWLTGRQHKVVHSSSASNF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1372 483 CDD RING-H2_EL5-like 126 169 - -
Glsi02g1372 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 174 IPR013083 -
Glsi02g1372 483 Pfam Ring finger domain 126 169 IPR001841 -
Glsi02g1372 483 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Glsi02g1372 483 SMART ring_2 127 168 IPR001841 -
Glsi02g1372 483 FunFam RING-H2 finger protein ATL46 89 174 - -
Glsi02g1372 483 SUPERFAMILY RING/U-box 106 177 - -
Glsi02g1372 483 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 39 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1372 Glsi-ChrGlsi02 10839184 10840635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1372 37 481 C3H Transcription Factor Family AT2G18650 46.567 4.59e-100 305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1372 02 10839184 10840635 Glsi02g1372 02 10839184 10840635 ECH