Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1349 ATGGTGGTTTTAGAAGCGGATGAGACTCAAGAAAAAATTGCCAATCATGGCTTTGAAACTGCCAGTGAAGGTGAACTCAGTAACGACGACGATGAAGGCAGTGCATATGAAGACCAATTACGACCACAACAAGAAGAAGATCATCATCATCGAGAGCAAGTGGAAGAGCAGGGTGCCTCTCCTACAAGTGTCTCTCCACAAAATGCCTTAAACGACGACGTAAACGAAATGAAACAGTATGAGGAGGCACTATCAAAGTATGACCTTGCCTTACAAGTTGCACCAGAGATGCCCTCCTCTGTAGAATTGCGTTCCATATGCCATACAAATCGTGGCACATGCTTTATAAAGCTGGGAAAATATGAGGATACAATCAAAGAATGTTCAAAAGCATTAGAAGTCAAACCTGTGTATGTTAAAACTTTGGTGAGGAGAGGAGAGGCTCGTGAAAAGCTTGAACATTTTGAAGAAGCTGTAGCTGATATGAAAAAAATTCTAGAAATTGATTCCTCAAATGACCAAGCTAGAAGACTCATCTGCCGTCTGGAACCCTTGGCTGCTGAAAAGCGTGAAAAGATGAAGGAGGAAATGATTGTGTTGACAACTTCCAAGCTGTCAAGGATCCAGACACTGGTTCCTATTCTATTTCATTCCAACGCTAAGTTTGGTCGGGTGAAGTCATGCGGCTACTTGGAGTAA 699 0.4249 MVVLEADETQEKIANHGFETASEGELSNDDDEGSAYEDQLRPQQEEDHHHREQVEEQGASPTSVSPQNALNDDVNEMKQYEEALSKYDLALQVAPEMPSSVELRSICHTNRGTCFIKLGKYEDTIKECSKALEVKPVYVKTLVRRGEAREKLEHFEEAVADMKKILEIDSSNDQARRLICRLEPLAAEKREKMKEEMIVLTTSKLSRIQTLVPILFHSNAKFGRVKSCGYLE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1349 232 Coils Coil 145 165 - -
Glsi02g1349 232 MobiDBLite consensus disorder prediction 1 70 - -
Glsi02g1349 232 MobiDBLite consensus disorder prediction 34 56 - -
Glsi02g1349 232 Pfam Tetratricopeptide repeat 140 171 IPR019734 GO:0005515
Glsi02g1349 232 SUPERFAMILY TPR-like 77 183 IPR011990 GO:0005515
Glsi02g1349 232 ProSiteProfiles TPR repeat profile. 139 172 IPR019734 GO:0005515
Glsi02g1349 232 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 17 205 - -
Glsi02g1349 232 SMART tpr_5 64 97 IPR019734 GO:0005515
Glsi02g1349 232 SMART tpr_5 139 172 IPR019734 GO:0005515
Glsi02g1349 232 SMART tpr_5 105 138 IPR019734 GO:0005515
Glsi02g1349 232 ProSiteProfiles TPR repeat profile. 105 138 IPR019734 GO:0005515
Glsi02g1349 232 Gene3D Tetratricopeptide repeat domain 17 198 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1349 Glsi-ChrGlsi02 10467781 10480585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1349 78 195 Calmodulin-binding Proteins AT3G25230 35.000 2.66e-09 55.1