Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1342 ATGGCTTTCAATTGGGTCGTTGTTCTCGTCTTCTTTCTCTCGTTTTCTCGACTTTGTCTCTCTTCTGAGCCTCGCAACCACGAGGTGGAGGCTTTGATAAGCATAAGAGATGCTCTGAATGATCCTCATGGGGTGTTAAGCAACTGGGATGAGTACTCGGTGGACCCTTGCAGTTGGTCTATGATCACTTGTTCATCTGATTCCCTTGTTGTAGGCCTGGGAGCGCCGAGCCAATCTCTCTCTGGAACTTTATCTGGAGCAATTGGAAATCTGACAAATCTTCGACAAGTGTTGCTGCAGAACAACAATATCTCTGGCAAAATCCCACTGGAGCTTGGTACCCTTCCCAAGCTTCAAACTCTAGATCTTTCCAATAATCGAATCTCTGGTGCGATTCCAGGGTCTCTGAGTCGATTGAATAGTCTCCAGTACCTGAGGCTGAACAACAATAGCCTGTCTGGGCCCTTTCCTGTATCACTTGCCAAAATTCCACTGCTTACTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTACCCAAGTTTCCAGCCAGAACATTCAATGTCGTGGGAAACCCACTGATTTGTGGGAGCAGCTTTGCTGAAGGTTGCTCTGGATCAGCAACTCTCACACCTGTTTTCTTCTCTCTAACATTGTCACAACGAAAACACAGGTCCAAGAAGCTAGCAATTGTACTTGGTGTCAGTCTTAGCTTTGCTTGTCTCATACTTCTGTCTCTTGGGCTCTTATGGTATAGAAAGAAACGGCAGCACCGAGGCATCCTGTACATCAGTGATTATCAGGAAGAAAGACTAGTTAGTTTGGGAAATCTAAAAAATTTTACTTTCAGAGAGCTCCAACATGCAACAGATAATTTCAGCACCAAGAACATACTTGGTGCAGGAGGTTTTGGCAATGTTTATAGGGGAAAGCTGGGAGATGGGACAATGGTGGCAGTGAAAAGGCTGAAGGATGTAACTGGAAGTGCTGGGGAATCACAGTTCCAAACAGAACTGGAGATGATCAGCCTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGCTTCTGGTTTATCCTTATATGTCCAATGGCAGTGTGGCTTTCAGGCTCAGAGGAAAACCTTCTTTGGACTGGAACACAAGAAAGAGGATTGCAATTGGAGCTGCTAGAGGTCTTCTGTATCTTCATGAGCAATGTGATCCAAAGATAATACACAGAGATGTAAAGGCTGCTAATGTGCTTCTGAATGACTATTGTGAGGCTGTTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGACTCTCATGTCACCACTGCTGTCCGTGGCACTGTTGGGCATATTGCACCGGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTGGAGCTCATAACAGGAATGACAGCCCTTGAGTTTGGGAAAACAGTTAATCAGAAAGGCGTGATGCTAGAGTGGGTTAAGAAAATACAGCATGAAAAGAAGCTTGAAGTGTTGGTTGACCGAGAGCTAGGGAGCCACTATGACTGGATAGAAGTGGGAGAAATGCTGCAAGTAGCTTTACTTTGCACTCAATATTTGCCAGCCCACCGTCCGAAAATGTCTGAAGTGGTCCAAATGCTTGAAGGTGATGGCCTTGCTGAGAAGTGGGCAGCATCCCATAATCATGGTAGTCTGAGCATGAACTCCTTTCACAGCAACAGTATCTGTAGTTCATCATCCCGCCCTACCACTTCTTTACAACATGATGACAATGGTCATGACCGTTCCAGCTTGTTTGGCATGACAATGGACGATGACGATGACGAACATTCTTTGGATACCTATGCCATGGAACTCTCTGGTCCAAGATAG 1920 0.4516 MAFNWVVVLVFFLSFSRLCLSSEPRNHEVEALISIRDALNDPHGVLSNWDEYSVDPCSWSMITCSSDSLVVGLGAPSQSLSGTLSGAIGNLTNLRQVLLQNNNISGKIPLELGTLPKLQTLDLSNNRISGAIPGSLSRLNSLQYLRLNNNSLSGPFPVSLAKIPLLTFLDLSYNNLSGPLPKFPARTFNVVGNPLICGSSFAEGCSGSATLTPVFFSLTLSQRKHRSKKLAIVLGVSLSFACLILLSLGLLWYRKKRQHRGILYISDYQEERLVSLGNLKNFTFRELQHATDNFSTKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVAFRLRGKPSLDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLNDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGVMLEWVKKIQHEKKLEVLVDRELGSHYDWIEVGEMLQVALLCTQYLPAHRPKMSEVVQMLEGDGLAEKWAASHNHGSLSMNSFHSNSICSSSSRPTTSLQHDDNGHDRSSLFGMTMDDDDDEHSLDTYAMELSGPR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1342 639 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 207 - -
Glsi02g1342 639 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Glsi02g1342 639 Gene3D Ribonuclease Inhibitor 25 207 IPR032675 -
Glsi02g1342 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 574 - -
Glsi02g1342 639 SUPERFAMILY Protein kinase-like (PK-like) 275 564 IPR011009 -
Glsi02g1342 639 FunFam Somatic embryogenesis receptor-like kinase 1 371 583 - -
Glsi02g1342 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Glsi02g1342 639 Gene3D Transferase(Phosphotransferase) domain 1 371 582 - -
Glsi02g1342 639 MobiDBLite consensus disorder prediction 603 621 - -
Glsi02g1342 639 Pfam Protein tyrosine and serine/threonine kinase 296 563 IPR001245 GO:0004672|GO:0006468
Glsi02g1342 639 ProSiteProfiles Leucine-rich repeat profile. 117 140 IPR001611 GO:0005515
Glsi02g1342 639 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Glsi02g1342 639 SUPERFAMILY L domain-like 25 190 - -
Glsi02g1342 639 Gene3D Phosphorylase Kinase; domain 1 264 370 - -
Glsi02g1342 639 SMART serkin_6 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1342 639 FunFam Somatic embryogenesis receptor kinase 1 264 370 - -
Glsi02g1342 639 ProSiteProfiles Protein kinase domain profile. 294 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1342 639 Pfam Leucine rich repeat 116 176 IPR001611 GO:0005515
Glsi02g1342 639 PRINTS Leucine-rich repeat signature 163 176 - -
Glsi02g1342 639 PRINTS Leucine-rich repeat signature 118 131 - -
Glsi02g1342 639 MobiDBLite consensus disorder prediction 592 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1342 Glsi-ChrGlsi02 10317820 10322578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1342 3 509 Receptor kinase-like Gene Family AT2G23950 76.134 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi02g1342 Pkinase 8.2e-41 CL0016