Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1336 ATGCCAGATTTAGGAAATTTGTCGCTCTCAGCTACTCTAACACTCTCTCACTGTCCTAACCTGAGGCCCACGGCTGAGCCATCTGATCTTAGCAATTCCTTGTACCCTGTTCCGGTGAAAACCCTAGGTAATGACTACATTTCGGACCACACTTTGCTATTCCCGGTTCTTCATCAAGAAAAGGTTGACAACGGAAGTGAAATTAGGGTTTTGAGGCGTAGCCGTGGTTCATTGGATCGAGTCAAGAAGGCAGCCAATGTCAAGAATTTGGAGGATCACGTGAAAGAATGGTCCGAGAAGAAGATGGACTCGGGGCATTCGAGACTGCGGTGCTCTCTTCCATTTCTTGTTGGTGCTCCGACGATGGTTGAATGCCTTGTTTGCCATCAGTTTGTCTACCCCGGGGAGGAGATACTATGTTCTGTTCGTGGTTGCGAAAGAGTCTACCACATGGAATGTGCAAAAGAAGCTGTAGGGGTTTCAAATATCAAAAAATTCAAGTGCCCACAACATGTATGCTTCATTTGCAAGCAAAAATTACATTGGCGGTGTGTGCGATGCACAGTGGCATTTCATAATAAATGTTCACCATGGCCAGATGCAGTGATGCCTCTAAAAGATCATCCTGGATCAGCTGTTTGTTGGAGGCATCCTACTGATTGGCGGCAGGATAGGAAGTGTGAAGTTTCAACAAGTAACATAGAGGAAGTTTTTTCTCGTTTGCCTCTACCCTATGTCAATGAGGAGTTCAAGATTGATTTCACTTGGAAAGACATGGAAAGTAAGATGGAGCCACCGCCATATGTACACATTAGACGCAATGTATTCCTAATCAAGAAGAAGCGTAGTGATGAAGATGATGGGGCAGGGTGCACCAGTTGCAGTTCTTCATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGTTGCTCAAAGGCTTGTCGCTGCTCAGAAAATTGCAACAACAGGCCCTTTCGCAAGGACAAAAAGATCAGGATTGTCAAGACTGAACTTTGTGGATGGGGAGTAGAGGCTGCTGAAACCGTCAATAAAGGCGAATTTATAATTGAGTATATTGGAGAAGTTATTGATGATGCTTTGTGTGAAAAAAGGCTTTGGGATATGAAACACAGAGGCGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATCGATGCAACTTTCAAAGGAAATACATCACGGTTTCTAAACCATAGCTGTGATCCCAACTGTGTTTTGGAAAAGTGGCAAGTTGATGGTGAAACACGCGTCGGTGTATTTGCTGCCCGGTCAATAGAAGTTGGAGAGCCGTTAACATATGATTACAGGTTTGTGCAATTTGGACCAGAGGTCAAATGCCACTGTGGTGCCCCAAATTGTCAAGGATTTCTTGGGACCAAAAAGAAGATTGACAAGGTTGACCTTTGCTGGGGCACGAAACGCAAGAGAACGTCAACTGCTTGCATTGCCATAATAGCAGCAGCTGTATGA 1503 0.4438 MPDLGNLSLSATLTLSHCPNLRPTAEPSDLSNSLYPVPVKTLGNDYISDHTLLFPVLHQEKVDNGSEIRVLRRSRGSLDRVKKAANVKNLEDHVKEWSEKKMDSGHSRLRCSLPFLVGAPTMVECLVCHQFVYPGEEILCSVRGCERVYHMECAKEAVGVSNIKKFKCPQHVCFICKQKLHWRCVRCTVAFHNKCSPWPDAVMPLKDHPGSAVCWRHPTDWRQDRKCEVSTSNIEEVFSRLPLPYVNEEFKIDFTWKDMESKMEPPPYVHIRRNVFLIKKKRSDEDDGAGCTSCSSSCSDDCVCRVQCISCSKACRCSENCNNRPFRKDKKIRIVKTELCGWGVEAAETVNKGEFIIEYIGEVIDDALCEKRLWDMKHRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAPNCQGFLGTKKKIDKVDLCWGTKRKRTSTACIAIIAAAV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1336 500 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 500 IPR025787 -
Glsi02g1336 500 CDD SET_ASHR3-like 331 469 - -
Glsi02g1336 500 Gene3D SET domain 245 488 IPR046341 -
Glsi02g1336 500 Pfam SET domain 341 446 IPR001214 GO:0005515
Glsi02g1336 500 ProSiteProfiles AWS domain profile. 287 330 IPR006560 GO:0005634|GO:0042054
Glsi02g1336 500 SUPERFAMILY FYVE/PHD zinc finger 122 171 IPR011011 -
Glsi02g1336 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 220 IPR013083 -
Glsi02g1336 500 ProSiteProfiles SET domain profile. 330 447 IPR001214 GO:0005515
Glsi02g1336 500 SMART set_7 330 453 IPR001214 GO:0005515
Glsi02g1336 500 FunFam Histone-lysine N-methyltransferase 245 479 - -
Glsi02g1336 500 CDD PHD2_NSD 124 171 - -
Glsi02g1336 500 ProSiteProfiles Post-SET domain profile. 453 469 IPR003616 -
Glsi02g1336 500 SUPERFAMILY SET domain 257 466 IPR046341 -
Glsi02g1336 500 SMART PHD_3 124 172 IPR001965 -
Glsi02g1336 500 PANTHER SET DOMAIN PROTEINS 82 487 - -
Glsi02g1336 500 SMART PostSET_3 453 469 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1336 Glsi-ChrGlsi02 10208357 10215388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1336 311 468 C2H2 Transcription Factor Family AT2G23740 35.754 1.11e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi02g1336 SET 7e-18 No_clan