Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1335 ATGGCGAAATTATCACAGCAAACCCAGAAAAACAATGCCAGCACTAGTACTAATAACAGCAATCTTAACGTAAAGAAAAGAACAAGGAGAAGTGTCCCTAGAGATTCTCCTCCTCGACGTAGCTCTATATATCGAGGAGTCACCAGGCACCGGTGGACAGGCCGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAACGAGTCGCAAAACAAGAAAGGACGACAAGGGGCTTATGACGATGAAGAAGCAGCAGCACATGCTTATGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATCCTTAACTTTCCTGTATCCACCTACCAGAACGAACTGCAAGAAATGGAGGGTCAATCAAGAGAAGAGTATATTGGATCACTAAGGAGGAAAAGCAGTGGTTTTTCCCGGGGAGTTTCCAAATACAGGGGCGTTGCAAGACATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTTGGCAACAAGTATCTTTATCTTGGGACTTACGCTACCCAAGAAGAAGCAGCCACTGCTTATGATATGGCGGCTATAGAATACCGTGGGCTCAATGCCGTCACTAATTTTGACTTGAGCCGTTATGTTAAGTGGCTTAAGCCTAATAGTTGCAACAACAATGATAATAATATGATTAGTGGTAATATCAGCGAGTCTAACCCTAAATGTAACCCCAACTTCACCCCACCAAACCCTAATCAAGAACATGGATTCAGCTTCTTTCACAACCAGAACTCATTCAGCATTAATGGAGAAGAAACCATATTGACTCAGTCACGGCCGGCAACTGCCACGACAGCCCTAGGGCTTCTGCTACAATCGTCCAAGTTTAAGGAAATGATGGAGATGGCATCTGCTGCTGATTTACCGATCTCGGCGCTGCCAGAGTCCGAGCTGCCGCATGAACAGTGCGCATTTCCTGATGACATTCAGACGTACTTTGAGTGTGAAGACTCGAACAGTAATGGGGAAGGGGATGATCACATCATGTTCAATGAGCTCAACTCCTTCGTGCCCCCTATGTTCCATTGTGATGACTTCGAGAATTGA 1077 0.4513 MAKLSQQTQKNNASTSTNNSNLNVKKRTRRSVPRDSPPRRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPVSTYQNELQEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYVKWLKPNSCNNNDNNMISGNISESNPKCNPNFTPPNPNQEHGFSFFHNQNSFSINGEETILTQSRPATATTALGLLLQSSKFKEMMEMASAADLPISALPESELPHEQCAFPDDIQTYFECEDSNSNGEGDDHIMFNELNSFVPPMFHCDDFEN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1335 358 SUPERFAMILY DNA-binding domain 141 202 IPR016177 GO:0003677
Glsi02g1335 358 Pfam AP2 domain 43 98 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 Pfam AP2 domain 141 192 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 FunFam AP2-like ethylene-responsive transcription factor 141 202 - -
Glsi02g1335 358 ProSiteProfiles AP2/ERF domain profile. 43 106 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 MobiDBLite consensus disorder prediction 1 46 - -
Glsi02g1335 358 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 256 - -
Glsi02g1335 358 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g1335 358 CDD AP2 141 202 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 SMART rav1_2 43 112 IPR001471 GO:0003700|GO:0006355
Glsi02g1335 358 FunFam AP2-like ethylene-responsive transcription factor 42 108 - -
Glsi02g1335 358 Gene3D AP2/ERF domain 43 108 IPR036955 GO:0003700|GO:0006355
Glsi02g1335 358 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Glsi02g1335 358 SUPERFAMILY DNA-binding domain 42 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1335 Glsi-ChrGlsi02 10176446 10179708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1335 39 251 AP2-EREBP Transcription Factor Family AT5G57390 57.511 1.33e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi02g1335 AP2 3.5e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1335 02 10176446 10179708 Glsi13g0754 13 26377210 26381445 CCT
Glsi02g1335 02 10176446 10179708 Glsi02g1335 02 10176446 10179708 ECH