Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1317 ATGGAAGCTAGTACAGGACTTTTTGCAGGGTCTCATAACAGCAATGAGCTTGTGGTCATAGAAGGACATGAAGAGCCTAAGCCTTTGAAGAACTTAGACGGACAGCTCTGCGAGATATGCGGTGATTCGGTGGGGTATACGGTGGACGGAGACTTGTTTGTGGCTTGTGAAGAGTGTGGTTTTCCGGTGTGCAGGCCATGCTACGAGTATGAAAGGAGGGAAGGGACACAAGTTTGCCCCCAGTGCCAGACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGGGAGATGAAGATGAAGATGATGTGGATGATATTGAACATGAATTTAAAGTGGAAGAAGAAAAGGACAAGCTAAGGCATGAAGGCATGCTGCAAGGGAAGATGAGCCATGGAGAAGATGATGGGAATGCTAAATCAGCACCAGTAGCATTAGCAAAGGTGAATGGGGAGGTGCTTGGAGAACCTGGAAGTGCAAAGTTGGATGAAAAGAAAGAGATAACAGACGATTGGAAGTTGCATCAAGGCAACCTGTGGCCTGAAACTGATGCCTCAGTTGACCCTGAAAAGGCCATGAGAGATGAAGCTAGACAGCCACTCTCAAGGAAAGTAGCAATACCATCAGGCAGACTAAGTCCTTATAGAATGATGGTTGCGACTCGGCTTATCATTCTACTATTGTTCCTTCCGTACAGAATCTTGCACCCAGTGCCTGATGCAGTTGGACTCTGGCTTACATCTGTAATTTGTGAAATCTGGCTTACTTTGTCATGGATAATTGATCAGCTTCCCAGATGGTTTCCCATTGATCGTGAGACATACCTTGATCGGCTTTCAATCAGGCTTGAACCAGAGAACAAGCCCAATTTGTTTTCTCCTATAGATGTCTTTGTCAGTACCGCGGATCCAATTAAGGAACCTCCTCTAGTTACAGCCAATACAGTTCTTTCAATCTTGGCCATGGATTACCCAGCTAATAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCCTTGCTCACCTTTGAAGCTCTCCAAGAAACTGCTGAATTTGCACGGAAGTGGGTACCTTTCTGCAAAAAATATTCTACAGAGCCTCGAGCACCGGAGAAGTACTTCTCTGAGAAGATTGATTTTCTAAAGGATAAGGTCCAGTCTACATATGTAAGAGATCGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTCAGAATAAATGCACTTGTGGCTAAATCAATGAGGATTCCCCTAGAAGGGTGGACTATGAAAGATGGGACACCATGGCCAGGAAACAATACCAAAGATCATCCTGGTATGATACAAATTCTTCTTGGTCAGAGTGGAGGCCAAGAAGGAAATGCACTGCCCTGTCTTGTCTACCTGTCTCGTGAGAAAAAGCCAGGGTTTGAACACCACAGCAAAGCTGGTGCCTTGAATTCCTTGCTTCGGGTATCTGCGGTGCTAAGCAATGCTCCTTTCGTGCTTAACTTGGATTGCAACCACTATGTGAATAACAGCAAGGTTGTGAGAGAGGCCATGTGCTTCTTCATGGACCTACAAGTTGGGAAGAGTATTTGCTTTGTACAGTTCCCACAAAGATTTGACAGCCTTGATAAGCATGATCGCTATGCCAACAGAAACACTGTTTTATTTGATATAAACATGAGGTGCCTGGATGGAATTCAGGGACCTATTTATGTAGGCACAGGATGTATCTTCAGAAGAAAAGCATTATATGGCTGTGATCCCCCAAAGGTATCAAAGCGCCCAAAAATGGAAGGCTGTGGCTGCTGTCCATGCTTTGGATCCCGCAAGAAGCTACAAGTGCACTCTAAGCATGACGGAAATGAAGAGGATGCAAACGTAACAGAAGCAGATCAAGACAAGCAGCTTTTAACGTCGCCAATGAATTTTGATACTAAATTTGGAAAGTCTGCAATTCTTGTGAACTCCTCCATAACGGAAGATGGTGGAATTCCTTCTTCCTCAAATCAGGCAGCCCTGCTTAAAGAGGCCATTCATGTCATGAATTCTAGCTATGAAGACAGAACCCTATGGGGAAATGAGGTAGGTTGGAACTATGGATCTATAGCATCAGACATTCTTACAGGATTTAAGATGCACTGTCGTGGTTGGAGATCTGTATACTGCATGCCAGAGAGACCTGCATTCAGGGGTACTGCTCCAATCAACCTTACAGATCGACTTAATCAGGTGCTTAGATGGGCAATGGGATCACTTGAGATCCTCTTCAGCTCCCACTGCCCAGTATTGTACGGCTTAAACGAAGGAAAACTCAAGGGCCTTCAGAGGGTTGCCTACATAAATAGCACTGTGTACCCTTTCAGTTCAATACCCCTCCTAATATATTGTCTCCTTCCTGCCATCTGCTTGCTTACTGGAAAATTCATCACACCATCGATAAGCACTTTTGCAAGTCTCATCTTTGTTGCACTGTTCATCTCAATCTTTGCATCAAGTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCTTGAGGAATGGTGGAGAAACGAGCAATTCTGGGTCATTGGCAGTGTGTCAGCGCACCTCTTTGCAATTGTAAGAGGCCCTCTGAAGGCTCTAGCTAAAGTTGATATAAACTTCGAAGTTGTATCAAAGGCACCGGATGATGGCGAGTTCCGTGATCTATACACCTTCCGATGGACTGCCCTCCTAATACCTCCAACCACTATCATAATCATCAATCTTGTAGGTATTGTAGCTGGGTTTACAGATGCCATAAACAGCGGTGATCATTCTTGGGGAGCACTCCTTGGGAAGCTCTTCTTTTCCTTATGGGTTCTTGCTCATCTCTACCCATTCCTTAAAGGTATGATGGGTAGGCAGAACCGAACACCAACCCTTGTTATCATATGGTCAATTCTTTTGGCTTCTGTTTTCTCCTTGCTTTGGGTAAGAATTGATCCTTTTGTGTTAAAAACAAAAGGACCTGACGTCAAGCAATGTGGAATCAGTTGCTGA 3009 0.4437 MEASTGLFAGSHNSNELVVIEGHEEPKPLKNLDGQLCEICGDSVGYTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCQTRYKRIKGSPRVEGDEDEDDVDDIEHEFKVEEEKDKLRHEGMLQGKMSHGEDDGNAKSAPVALAKVNGEVLGEPGSAKLDEKKEITDDWKLHQGNLWPETDASVDPEKAMRDEARQPLSRKVAIPSGRLSPYRMMVATRLIILLLFLPYRILHPVPDAVGLWLTSVICEIWLTLSWIIDQLPRWFPIDRETYLDRLSIRLEPENKPNLFSPIDVFVSTADPIKEPPLVTANTVLSILAMDYPANKISCYVSDDGASLLTFEALQETAEFARKWVPFCKKYSTEPRAPEKYFSEKIDFLKDKVQSTYVRDRRTMKREYEEFKVRINALVAKSMRIPLEGWTMKDGTPWPGNNTKDHPGMIQILLGQSGGQEGNALPCLVYLSREKKPGFEHHSKAGALNSLLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDLQVGKSICFVQFPQRFDSLDKHDRYANRNTVLFDINMRCLDGIQGPIYVGTGCIFRRKALYGCDPPKVSKRPKMEGCGCCPCFGSRKKLQVHSKHDGNEEDANVTEADQDKQLLTSPMNFDTKFGKSAILVNSSITEDGGIPSSSNQAALLKEAIHVMNSSYEDRTLWGNEVGWNYGSIASDILTGFKMHCRGWRSVYCMPERPAFRGTAPINLTDRLNQVLRWAMGSLEILFSSHCPVLYGLNEGKLKGLQRVAYINSTVYPFSSIPLLIYCLLPAICLLTGKFITPSISTFASLIFVALFISIFASSILELRWSGVSLEEWWRNEQFWVIGSVSAHLFAIVRGPLKALAKVDINFEVVSKAPDDGEFRDLYTFRWTALLIPPTTIIIINLVGIVAGFTDAINSGDHSWGALLGKLFFSLWVLAHLYPFLKGMMGRQNRTPTLVIIWSILLASVFSLLWVRIDPFVLKTKGPDVKQCGISC 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1317 1002 SUPERFAMILY RING/U-box 21 107 - -
Glsi02g1317 1002 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 198 969 - -
Glsi02g1317 1002 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 451 584 IPR029044 -
Glsi02g1317 1002 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Glsi02g1317 1002 Coils Coil 393 413 - -
Glsi02g1317 1002 CDD mRING-HC-C4C4_CesA 35 85 - -
Glsi02g1317 1002 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Glsi02g1317 1002 Pfam Cellulose synthase 295 996 IPR005150 GO:0016020|GO:0016760|GO:0030244
Glsi02g1317 1002 SUPERFAMILY Nucleotide-diphospho-sugar transferases 308 822 IPR029044 -
Glsi02g1317 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 109 IPR013083 -
Glsi02g1317 1002 FunFam Cellulose synthase 19 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1317 Glsi-ChrGlsi02 9852977 9858848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1317 1 1002 Cell Wall Biosynthesis AT5G17420 68.872 0.0 1482