Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1305 ATGGAATTTAAGTTCCGAGCTATTGATCGCAAGCTACCATCTTCTCAACTCCCGACCATCAGCCCCTCTTCTAATCATTCTTTGCGAGCTGGTTTTTCGAGCGCTTTCCCGTTACTGAACACTGACCAAATGGCAACCCCAAACGGTGCCGCGGAAGAGTTACGGCGTGAGCTCGAGAAAGAGCAGATCAAACGAGAGATAATCTCCGGTGAGATAGTGAGGAGGCGATTGCTGGAGGAAGAAGTGAGAAGGGAGCTGATGGTGGAGAGAGAGCTGGCAATGCGGTTGTTTAATCCCAGGCTTCAACTCATGATGCACCCATATGATAATCGGCCACTTGAGGAGCGAATTGCATTTCCACGTAGAAGGGAATTGAGCTTGTCAACTATGCCACTTCTACCGCAACTTATGACCCCTGAAACAGGGCCTCCTCCTGAGACTAACAAGGATAAGTTAATCATGCTGACTAAGCTGGACCCAAATCTTAACGGAGCAAAGCGGAAAACTGTAACTCCACCTGCAGTTGATGGTGGTGAGCATTTTCCATTTGGTTTGAAGAAAAAACCCAAGGAGGACTGGAGTTGTGCATTATGTCAGGTCAGTACCACAAGTGAGAAAGCCTTGAATGCACACCTTCAGGGAAGGAAGCACAAGGCCAAGGTAGCTGCACTGAGAATGCCAAAGATTGGATTGGATGCAAAAGCTGATGTGGTTGATGAAGACAAAGTGGAAATTAAAAATGAGGACCCGTTCGTGCAGAAAAACCAAAATAGAAATTCGAAGAAGCGAGGTGGGATTGCAACAGAGCAAGTTGGAAAAACAAATGCAGTGAAGAGGAAGAGGAAATTCAAGTTTTGGTGTGAACTCTGCCGAGTTAGAACTGGCTCTATAATATCGATGGAGAGCCATAAAAAGGGGAAAAAACATATTAAGCGAATGGAGAAATTATGTCAAAATGATGGGAGTGCCCCATCTACAACTACCGTAGTATCAGAAACTACTCCGTTGACAAAATATACACGCGCATCTGACATAGAAACAAAACTAATGACAAGTGTTCTGAGTAAAGAAACCAACATGAAGACAGCATACGGTTTTCCAAATTCCGGTCAGTTGTCACTAGTGCCTGAATCAGGTGGTGATAGAGTTAGAGAAGTACTTTGA 1164 0.4485 MEFKFRAIDRKLPSSQLPTISPSSNHSLRAGFSSAFPLLNTDQMATPNGAAEELRRELEKEQIKREIISGEIVRRRLLEEEVRRELMVERELAMRLFNPRLQLMMHPYDNRPLEERIAFPRRRELSLSTMPLLPQLMTPETGPPPETNKDKLIMLTKLDPNLNGAKRKTVTPPAVDGGEHFPFGLKKKPKEDWSCALCQVSTTSEKALNAHLQGRKHKAKVAALRMPKIGLDAKADVVDEDKVEIKNEDPFVQKNQNRNSKKRGGIATEQVGKTNAVKRKRKFKFWCELCRVRTGSIISMESHKKGKKHIKRMEKLCQNDGSAPSTTTVVSETTPLTKYTRASDIETKLMTSVLSKETNMKTAYGFPNSGQLSLVPESGGDRVREVL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1305 387 PANTHER OS06G0651300 PROTEIN-RELATED 1 322 - -
Glsi02g1305 387 Pfam Zinc-finger of C2H2 type 193 217 - -
Glsi02g1305 387 Pfam Zinc-finger of C2H2 type 285 309 - -
Glsi02g1305 387 Coils Coil 51 71 - -
Glsi02g1305 387 SUPERFAMILY beta-beta-alpha zinc fingers 282 316 IPR036236 -
Glsi02g1305 387 SMART ZnF_U1_5 190 224 IPR003604 GO:0003676|GO:0008270
Glsi02g1305 387 SMART ZnF_U1_5 282 316 IPR003604 GO:0003676|GO:0008270
Glsi02g1305 387 Gene3D Classic Zinc Finger 267 316 - -
Glsi02g1305 387 Gene3D Classic Zinc Finger 185 230 - -
Glsi02g1305 387 SMART c2h2final6 285 309 IPR013087 -
Glsi02g1305 387 SMART c2h2final6 193 217 IPR013087 -
Glsi02g1305 387 SUPERFAMILY beta-beta-alpha zinc fingers 168 226 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1305 Glsi-ChrGlsi02 9727917 9731495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1305 193 316 C2H2 Transcription Factor Family AT2G19380 26.613 2.11e-07 50.8