Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1290 ATGGCGTCTGTTGCCTCCTGTTTGAAAGAATCACCTGAGTCAATAGCAGTCAAAGACACAGATACCCCAACTCGTCGCTTTAAACCGAAATTCTCTCTCTCCCTCTCTCTCTCTCTGTGCCGCTTCGCGAACTCCGAAATACATTTGGGTTTCAGACACTATAAAAGAGAGCTTCGACTGTTTGTAACTTTACTCTCTGCTTCTGGAGCATCGGCCATGGCTGAGCTTGAGAGCTTCGCAGCTCTCGAAGAGGGAAAGCCAGAGCTACACGAAGGGCAACGAGAAGAGAACGAATTAGAAGAAGAAGAGGAACATAAACGAGTCTGTGAAGCACAGCCTAGCGAGTCGCAGCATGGCGAGTTGCAGAGTTCGAAAACTCTAGATGAAGCTGTGCCCAGAGAGCCTAATTTGGAAACCCTAGTTGTGCCCTCTTCAGTTGAACCCGTAGAGAACGATCAGAGTGCCGATTTGCAGGCTTGCTCTGCTACGGAGAAGGATGGCAAAGGCGAAAGCAAGGAGCCAGTTGAACCTTCTGACAAGGAAATCACCACAAGAGAAGCAGTCCAGGCAGCTCAAACTGATGTAGAAAATCAACTTCAGGTGTCTTTGTGTTCAACTCCATTGTCTGAACTATCACCAACTTCTGTTACTCAATCTTTATCATCTAGTCCCACTGTGCCAGAACAAAGACTGTCTTCTCCGAAGGTTAATAATGTACATGCGCCAGAGGTAGACAAGAAGAAGCCTTCTGGTCGTAACACCTTATCTGCTGTTTCTGTTGCGAGGACATCTGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAAAGTCCTACAGGTTCTCGAAGCTATTACAGGTGCACTCATTCAGAGTGTTGTGCTAAGAAGATTGAATGCTGTGACCATTCAGGCCATGTGGTAGAGATTGTTTATAAAAGTCAACACAGCCATGATCCACCACGGAAGATTAACTCCAGTAGGGATAGTAAGCTTGGATCATCCAAAGAACCTACTATAGAGAACAGTGTAGCAGAGCCGCCCATCAGAGTGCTCATTGATTCTGATCCATGCTCTTCTTCAAAGGAACCTCCACAAGAAGCACCATGCAGTGCTGATAAGAAACGACAAAACTCATCTGATCTCAGTGAGAATGGTAAAATTGTTTTGAAGGAGGAGCATGTTACTGAGTCAGAGCCAAAGAAAAGAGTGAAGAAAGGTGACTATACATACTCTGATTCTCCTGTAAAACCTGGAAAGAAACCTAAGTTTGTTGTACATGCAGCGGGGGATGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGGAATCCTCATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGTAAGCACATTGAGACTGCTGTAGATAACTCAAATGCTGTAATCATTACATATAAGGGAGTTCATGACCATGACATGCCTGTTCCTAAGAAACGACATGGTCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCGTCAATGAATAATTTGCAGTCCAAGAAATCTGAGACACTGCAAAAGCCAAAATCTTCTACTCAGTGGTCTGTGGACACAGAAGGAGAATTAACTGGGGAAGCCTTGGAACTTGGGGGCGAGAAAGCAATGGAGTCAGCTCGAACTCTTTTGAGCATCGGTTTTGAAATTAAGCCTTGCTGA 1734 0.4585 MASVASCLKESPESIAVKDTDTPTRRFKPKFSLSLSLSLCRFANSEIHLGFRHYKRELRLFVTLLSASGASAMAELESFAALEEGKPELHEGQREENELEEEEEHKRVCEAQPSESQHGELQSSKTLDEAVPREPNLETLVVPSSVEPVENDQSADLQACSATEKDGKGESKEPVEPSDKEITTREAVQAAQTDVENQLQVSLCSTPLSELSPTSVTQSLSSSPTVPEQRLSSPKVNNVHAPEVDKKKPSGRNTLSAVSVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSECCAKKIECCDHSGHVVEIVYKSQHSHDPPRKINSSRDSKLGSSKEPTIENSVAEPPIRVLIDSDPCSSSKEPPQEAPCSADKKRQNSSDLSENGKIVLKEEHVTESEPKKRVKKGDYTYSDSPVKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNLQSKKSETLQKPKSSTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1290 577 MobiDBLite consensus disorder prediction 316 333 - -
Glsi02g1290 577 SUPERFAMILY WRKY DNA-binding domain 262 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 ProSiteProfiles WRKY domain profile. 260 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 MobiDBLite consensus disorder prediction 83 113 - -
Glsi02g1290 577 Coils Coil 92 112 - -
Glsi02g1290 577 MobiDBLite consensus disorder prediction 163 183 - -
Glsi02g1290 577 FunFam WRKY transcription factor 425 499 - -
Glsi02g1290 577 MobiDBLite consensus disorder prediction 185 236 - -
Glsi02g1290 577 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 221 529 IPR044810 GO:0003700
Glsi02g1290 577 MobiDBLite consensus disorder prediction 362 379 - -
Glsi02g1290 577 Pfam WRKY DNA -binding domain 440 495 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 Pfam WRKY DNA -binding domain 267 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 MobiDBLite consensus disorder prediction 316 418 - -
Glsi02g1290 577 MobiDBLite consensus disorder prediction 380 413 - -
Glsi02g1290 577 Gene3D WRKY domain 252 325 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 Gene3D WRKY domain 423 499 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 ProSiteProfiles WRKY domain profile. 433 498 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 MobiDBLite consensus disorder prediction 161 259 - -
Glsi02g1290 577 MobiDBLite consensus disorder prediction 83 133 - -
Glsi02g1290 577 SUPERFAMILY WRKY DNA-binding domain 434 498 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 SMART WRKY_cls 265 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g1290 577 SMART WRKY_cls 438 497 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1290 Glsi-ChrGlsi02 9570113 9576018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1290 202 577 WRKY Transcription Factor Family AT4G30935 58.225 2.60e-134 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi02g1290 WRKY 2e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g1290 02 9570113 9576018 Glsi02g1290 02 9570113 9576018 ECH