Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1288 ATGGGTTTGGGAGTATTTGGTTCTATTCTAGTTCTGACATTTTTCTTCAAGCATTTGGCTTCTCAGCAACCAAATACTGATGGGTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGGTTTAACATCCTCCTCCCAAGCCTACAACTTCTCTGGTTCTTCCTTCTGTTCATGGCAAGGGGTTTTTTGTGATGCCAATAAAGAGTACGTCGTTGAGTTAATGGCTTCTGGTATAGGCCTTTCTGGCCCTATTCCTGATACCACCATTGGCAAGCTCAGCAGGCTTCAATCTTTGGATCTTAGCAGCAACAAAATCACTGGGTTACCTTCAGATTTTTGGAGTTTGAGCTCCCTCAAGAGCCTTAATCTTTCTTCCAATCAGATTTCTGGTTCACTCACAAACAATATTGGCAATTTTGGTTCGCTAGAAATCTTAGACTTGTCTAGCAACAATGTCACTGAAGAAATTCCGGAAGCTATAAGCTCCCTTATCAGTCTGAGAATTCTCAAACTTGCTCAGAACAGGTTTGAACATACCATACCTTTAGGGATTCTGAAGTGTCAGACTCTAGTTTCAATGGATCTTTCTTCAAATCTGCTAAATGGGACTCTTCCAGATGGTTTTGGTGCTGCATTTCCAAATCTCAAAATCTTGAACCTTGCTGGGAATAGTATTTATGGTCGGGATTCTGACTTTTTTGGGTTAAAATCAATTACTACATTGAATATATCTGGAAATTCGTTTATGGGTTCTGTCATGGGTGTGTTTCAGGAACGTTTGGAGATCATTGACCTTAGCAAGAACCAATTCCAGGGTCACGTTTCTCAGGTAAAGTTCAAAACTAATTACAATTGGTCTCATTTAGTTTACCTGGATTTATCTGAGAATCAGCTTAGTGGGGAAATTTTCCAGAATTTGAATGAAGCCTATAATCTGAAACACCTTAATCTTGCACACAATAGATTTTCCAGACAGAAGTTCCCACAGATTAAAATGCTCTCTATATTGGAGTACTTGAACTTGTCTAAAACCAGTCTTGTTGGTCATATTCCTGCTGAAATCTCAGAACTGAGATACTTGAATGTTCTGGATATCTCTGTGAATCATCTTACAGGGGAAATTCCCTTGCTAAGGAATAAAAACCTCCAAATTCTTGACCTTTCCATCAACAATTTAAGTGGTGAAATCCCTCCATTTGTCTTGGATAAACTCCCATGGATGGAGAAATATAACTTCTCATATAATAACTTTACCTTCTGTGACTCCCAATTCTCCCATGATATCCTTCAAACAGCGTTCTTTGGATCAGTGAAAAGTTGCCCAATTGCCGCAAATCCCATTCTTTTCAAAAGAAGAGCCTCAGTAAGCAAGGGAACCAAGCTAGCTCTGGCATTAACCCTAGCAATGATCTGCCTTCTCACCGGGCTTTTCTTTCTAGCATTTGGGTGCAGAAGGAAAACAAATTTGTGGGAAGTGAAGCAAACTTTATACAAAGAAGAACAAAACATCTCAGGTCCCTTTGAATTCCGGACTGATTCAACAACCTGGGTGGCTGATGTCAAGCAAGCAACATTGGTCCCAGTAGTGATCTTTGAGAAGCCATTGCTGAACATTACGTTTGCAGACCTCTTGTCTGCAACTTCAAACTTTGATCGCGGTACCCTTTTGGCTGAAGGGAAATTTGGGCCTGTTTATAGAGGCTTTCTACCTGGTGGCATTCATGTTGCAGTAAAAGTCTTGGTTGTTGGGTCTACATTGACAGATCAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACTGGGTATTGTTTAGCTGGAGATCAGAGGATTGCCATATATGATTACATGGAGAATGGGAACTTGCAGAACTTGCTCTATGACTTGCCACTTGGGGTGCAAAGCACAGAAGATTGGAGCACAGACACATGGGAAGAAGATGACAATGGTGGTGTGATTCAAAATTCTGGCTCTGAGGGATTGCTCACCACTTGGAGATTTCGTCACAAAATTGCTCTTGGCACTGCCAGAGCATTGGCCTTTCTTCACCATGGCTGCTCACCGCCAATCATCCACAGAGATGTCAAGGCTAGCAGTGTTTATCTGGATTACAATCTGGAACCAAGGTTGTCTGATTTTGGTCTGGCTAAGATTTTTGGAAATGGTTTGGACGAGGAAATTGCTTGTTGTTCACCTGGTTATGTTCCTCCAGAGTTTTCCCAATCAGAATATAACTCCCCAACACCAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTAATAACTGGGAAAAAACCAGATGGGGATGATTATCCTGATGAAAAGGAAGAAACTTTGGTCGGTTGGGTTAGAGGACTAGTAAGAAAGAACCAAGCTTCAAGAGCCATTGATCCGAAAATTCACGAAACAGGGCCGGATGATCAAATGGAGGAGGCCCTTAAGATTGGTTATCTTTGCACGGCTAATCTTCCCTCCAAGCGACCTAGCATGCAGCAGGTAGTTGGACTTCTCAAAGATATTGAACCTTCTGCTACTTAG 2571 0.415 MGLGVFGSILVLTFFFKHLASQQPNTDGFFVSEFLKKMGLTSSSQAYNFSGSSFCSWQGVFCDANKEYVVELMASGIGLSGPIPDTTIGKLSRLQSLDLSSNKITGLPSDFWSLSSLKSLNLSSNQISGSLTNNIGNFGSLEILDLSSNNVTEEIPEAISSLISLRILKLAQNRFEHTIPLGILKCQTLVSMDLSSNLLNGTLPDGFGAAFPNLKILNLAGNSIYGRDSDFFGLKSITTLNISGNSFMGSVMGVFQERLEIIDLSKNQFQGHVSQVKFKTNYNWSHLVYLDLSENQLSGEIFQNLNEAYNLKHLNLAHNRFSRQKFPQIKMLSILEYLNLSKTSLVGHIPAEISELRYLNVLDISVNHLTGEIPLLRNKNLQILDLSINNLSGEIPPFVLDKLPWMEKYNFSYNNFTFCDSQFSHDILQTAFFGSVKSCPIAANPILFKRRASVSKGTKLALALTLAMICLLTGLFFLAFGCRRKTNLWEVKQTLYKEEQNISGPFEFRTDSTTWVADVKQATLVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDQEAARELEYLGRIKHPNLVPLTGYCLAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTEDWSTDTWEEDDNGGVIQNSGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGNGLDEEIACCSPGYVPPEFSQSEYNSPTPKSDVYCFGVVLFELITGKKPDGDDYPDEKEETLVGWVRGLVRKNQASRAIDPKIHETGPDDQMEEALKIGYLCTANLPSKRPSMQQVVGLLKDIEPSAT 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1288 856 SUPERFAMILY Protein kinase-like (PK-like) 535 849 IPR011009 -
Glsi02g1288 856 Gene3D Ribonuclease Inhibitor 281 377 IPR032675 -
Glsi02g1288 856 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 235 851 - -
Glsi02g1288 856 Pfam Leucine Rich repeat 285 300 IPR001611 GO:0005515
Glsi02g1288 856 SUPERFAMILY L domain-like 53 420 - -
Glsi02g1288 856 Gene3D Ribonuclease Inhibitor 32 179 IPR032675 -
Glsi02g1288 856 Pfam Leucine rich repeat 83 127 IPR001611 GO:0005515
Glsi02g1288 856 Pfam Leucine rich repeat 188 246 IPR001611 GO:0005515
Glsi02g1288 856 Gene3D Ribonuclease Inhibitor 180 280 IPR032675 -
Glsi02g1288 856 FunFam Putative LRR receptor-like serine/threonine-protein kinase 510 624 - -
Glsi02g1288 856 FunFam Nuclear pore complex protein NUP107 26 180 - -
Glsi02g1288 856 Gene3D Transferase(Phosphotransferase) domain 1 625 856 - -
Glsi02g1288 856 FunFam Calmodulin-binding receptor kinase CaMRLK 257 375 - -
Glsi02g1288 856 Pfam Protein tyrosine and serine/threonine kinase 553 846 IPR001245 GO:0004672|GO:0006468
Glsi02g1288 856 SMART LRR_typ_2 138 161 IPR003591 -
Glsi02g1288 856 SMART LRR_typ_2 162 186 IPR003591 -
Glsi02g1288 856 SMART LRR_typ_2 211 234 IPR003591 -
Glsi02g1288 856 SMART LRR_typ_2 91 113 IPR003591 -
Glsi02g1288 856 SMART LRR_typ_2 114 137 IPR003591 -
Glsi02g1288 856 ProSiteProfiles Leucine-rich repeat profile. 93 114 IPR001611 GO:0005515
Glsi02g1288 856 Gene3D Phosphorylase Kinase; domain 1 510 624 - -
Glsi02g1288 856 Gene3D Ribonuclease Inhibitor 378 447 IPR032675 -
Glsi02g1288 856 PRINTS Leucine-rich repeat signature 94 107 - -
Glsi02g1288 856 PRINTS Leucine-rich repeat signature 114 127 - -
Glsi02g1288 856 ProSiteProfiles Protein kinase domain profile. 549 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1288 Glsi-ChrGlsi02 9544841 9547411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1288 64 852 Receptor kinase-like Gene Family AT4G39400 33.948 3.34e-111 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Glsi02g1288 PK_Tyr_Ser-Thr 2.9e-32 CL0016