Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1279 ATGGGTGACAAAGGCAGGGATGGTCACTCTGCTTTGCTCCATGGGAAGTACGAGCTCGGTCGCCTTCTGGGTCATGGCACTTTTGCTAAGGTCTACCACGCTAAGAACCTGCAGAGTGGGAAAAGTGTGGCCTTGAAGGTGGTGGGCAAAGAGCAAGTTATAAAGGTGGGGATGATGGAGCAGATCAAGAGGGAAATTTCCTCCATGAAGATGGTGGAGCACCCTAACATCGTTGAGCTCCATGAAGTTATGGCCAGCAAATCCAAGATCTATATTGCCATGGAGCTCGTTCGAGGTGGCGAGCTGTTCAATAAGATTGCTAAAGGCCGGCTGAGGGAAGACGTAGCCAGAGTCTATTTCCAGCAATTGATTTCGGCCATCGATTTTTGCCACAGTAGGGGCGTTTACCACCGCGATCTCAAGCCAGAAAATCTGCTTCTAGACGAAGATGGGAACCTGAAAGTCAGTGATTTTGGTCTCAGCACCTTCTCTGAGCACTTAAGACAAGATGGGTTGTTGCATACAACTTGTGGAACTCCGGCGTACGTGGCGCCGGAGGTAATTGGGAAGAAAGGCTACGATGGTGCCAAGGCCGATCTCTGGTCTTGTGGGGTCATTCTCTACGTTCTTCTTGCCGGGTTCTTACCCTTTCAGGATGACAATTTGATGGCTATGTACAGGAAAATCTACAGGGGAGACTTCAAATGCCCACCCTGGTTCTCCTCCGAAGCTCGTCGACTGATCACGAAGCTGCTCGACCCGAACCCGAATACCCGTATCACGATTTCCAAGATCATGGGCTCGTCTTGGTTCAAGAAATCGATTCCCAAGACCATGATCAAGACGAAAGCAGAACAAGAATTTGACTTCGATGAGATTTGCGAGAAATCTAAGGAGACGATGAACGCGTTCCACATAATATCGCTATCGGAAGGGTTCGACTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAGGAGGAGTTGAGATTCGTGACGATGAAGCCGGCGAGCAGCGTGATATCGAGACTGGAGGAGGTGGCGAAGGCGGAGAGGTTCAACGTGAAGAAGAGCGAGACGAAGGTGAAGCTGCAGAGGCAGGAATGTGGAAGAAAAGGGAAGCTGGCGATTGGGGCGGAGATATTCGCGGTGACACCGTCGTTTCTGGTGGTGGAGGTGAAGAAGGATAATGGGGACACCTTAGAGTACAACCAATTCTGCAGCAAAGAGCTTCGACCTGCACTAAAAGACATCGTGTGGACGTCACCCCCCGAGAACTCCACGCCTGCTTGA 1296 0.5085 MGDKGRDGHSALLHGKYELGRLLGHGTFAKVYHAKNLQSGKSVALKVVGKEQVIKVGMMEQIKREISSMKMVEHPNIVELHEVMASKSKIYIAMELVRGGELFNKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADLWSCGVILYVLLAGFLPFQDDNLMAMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPNTRITISKIMGSSWFKKSIPKTMIKTKAEQEFDFDEICEKSKETMNAFHIISLSEGFDLSPLFEEKKREEKEELRFVTMKPASSVISRLEEVAKAERFNVKKSETKVKLQRQECGRKGKLAIGAEIFAVTPSFLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWTSPPENSTPA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1279 431 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Glsi02g1279 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Glsi02g1279 431 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Glsi02g1279 431 Gene3D Kinase associated domain 1, KA1 295 422 - -
Glsi02g1279 431 CDD STKc_SnRK3 16 270 - -
Glsi02g1279 431 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Glsi02g1279 431 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1279 431 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Glsi02g1279 431 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1279 431 Pfam NAF domain 299 358 IPR004041 GO:0007165
Glsi02g1279 431 CDD CIPK_C 302 417 - -
Glsi02g1279 431 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165
Glsi02g1279 431 FunFam Non-specific serine/threonine protein kinase 7 299 - -
Glsi02g1279 431 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1279 431 FunFam Non-specific serine/threonine protein kinase 296 421 - -
Glsi02g1279 431 SUPERFAMILY Protein kinase-like (PK-like) 14 282 IPR011009 -
Glsi02g1279 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1279 Glsi-ChrGlsi02 9445066 9446361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1279 3 425 CBL-interacting serine-threonine protein kinases AT4G30960 76.443 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi02g1279 Pkinase 7.8e-73 CL0016