Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1278 ATGGGAACTGAGGTGTTCAAATATATGCTAATTCACCAGCAGATTTGGCTCGGAACTTTTGAGTCTACAAAGGAAGCAGCTTTGGGTTATGATAGCGCAGCTATCCAGCTTCCAAGTGGTGATTCCCACAGAAATTTTCAGAGTCAATATAGCACAGAAGTTGTGCTCAATAAGATTAAAGATGATTCATACCAATGGAAATTTGCTGAGTTCTTGAGGACTTGTTACCAGGTACTTTCTGAAACAAGAAATGGTCTCAACTGGTCTATGATGCAGAAAAGAGAAAGAGAGCTCTCATTCATTTCTCGGAGAGTAGAGGAGAATGTGCTAGTTGGTGTGGTGGATGACACAGAGATGGTTGTTTTGGACAGGATGATGAGGTCTTGGAAGTTCCGCTACTACTATTGGAAGAGCAGCCAGAGTTTTGTGTTTACCCAGGGGTGGATTCGGTTTGTGAAAGAAAAGAAGTTGAAGGCCAATGATATCATTGCATTCTGCTTGTGTGAGTCTAAGGAAGGAGGCAAAGTGGTTGAAAAATTCTGCATGATTGAAGTCATCAGAGGTGAAGATACTGGTAGCTCAATTGATGGCGCTAATCAACAAGGATTGGAACCTGAAATAGGCCAGCATGAGGGTGAGGAAAGCCTTGAAGATGACAAATTTATAGAAACTAGCCCAACAATTGACACTGAGAGAAAAGGTTTTAGATTCTTTGGAGTCCAAATTATTTGA 732 0.4126 MGTEVFKYMLIHQQIWLGTFESTKEAALGYDSAAIQLPSGDSHRNFQSQYSTEVVLNKIKDDSYQWKFAEFLRTCYQVLSETRNGLNWSMMQKRERELSFISRRVEENVLVGVVDDTEMVVLDRMMRSWKFRYYYWKSSQSFVFTQGWIRFVKEKKLKANDIIAFCLCESKEGGKVVEKFCMIEVIRGEDTGSSIDGANQQGLEPEIGQHEGEESLEDDKFIETSPTIDTERKGFRFFGVQII 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1278 243 SMART B3_2 87 184 IPR003340 GO:0003677
Glsi02g1278 243 Gene3D - 47 191 IPR015300 -
Glsi02g1278 243 ProSiteProfiles B3 DNA-binding domain profile. 118 183 IPR003340 GO:0003677
Glsi02g1278 243 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 242 IPR044800 GO:0003700
Glsi02g1278 243 SUPERFAMILY DNA-binding pseudobarrel domain 112 171 IPR015300 -
Glsi02g1278 243 Gene3D AP2/ERF domain 7 46 IPR036955 GO:0003700|GO:0006355
Glsi02g1278 243 Pfam B3 DNA binding domain 103 177 IPR003340 GO:0003677
Glsi02g1278 243 ProSiteProfiles AP2/ERF domain profile. 1 47 IPR001471 GO:0003700|GO:0006355
Glsi02g1278 243 CDD B3_DNA 116 165 IPR003340 GO:0003677
Glsi02g1278 243 SUPERFAMILY DNA-binding domain 12 48 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1278 Glsi-ChrGlsi02 9428429 9429254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1278 12 242 RAV Transcription Factor Family AT1G50680 38.542 6.17e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi02g1278 B3 1.3e-15 CL0405