Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1275 ATGATTATGCAGCCTTGTAGCAGAGAAATGCAAGGAATAAACTCCCTCTTAAACTCTTCTCAATTTTCTCTCCAGGACCTCCATAACAACCACCACCAGATCCAAAACTCTCAGATGCATCCCCCTCAGCTCAACCACACCGCCTCCTCTCACTTCGACCCCACTTCCCATGACGATTTTCTCGACCAAATGCTCTCCAACCTTCCTTCATGCTCCTGGCCTGACCTCAACCCCAAGCCCTTGTGGGACCTCATCAACGTTAACGGAACCGTCCCCGACATGAAGCCCAGAGACCTTCCCGACGATACGCCGCCGCCTGACGCCGAGAATGTTGCGTTTCAGTATGATGACCAGGCAAACTTGGCCTCCAAGTTCCGAAACCATCAGATCAGTAGCAGCTCCTCCCCCTCTACGAAGTCCGCGGCGGCTTTGATGCTTCGGGCCCAGCAGCAGCAGCAGCTTCTGATGTCTCGAGGTGTCGCTGGAGCCGGAGGTTTAGGCTTATCCGGCGCGGGTGACTCGGGCCTCCTTCCGATGCCGTTGTCGTTGGGTGGCGGCGACTTTGAACGCTCCCGAAACGATGTCGGGGACGGGTCATCTTTCAAAGTTCCCAATCCGGCTGGTGATGCTTCAGTTCAAGCTCTGTACAACGGGTTCGCCGGTTCTCTGCATGGCGGTGGTCAAGTTTCAAATCAGAGTCCCCATTTTCATCATCCTCAGGGACAGAATTTCGGAGCTTCAGCGGCCGCAACGACCCAAGCTCAGACTAGTGGCACTCCTGCACAACCGAGGCAGAGACCTAGGGCCAGAAGAGGTCAGGCGACGGACCCACACAGCATCGCCGAGAGGTTACGAAGGGAGAGAATTGCAGAGAGAATGAAGGCCCTGCAGGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCCTCTATGCTGGATGAGATTATCGATTATGTGAAGTTCCTACAGCTCCAAGTTAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCCCTTGTTGCTGATATGGCCTCTGAGGGAGGCGGTGGCGATTGCATCCAAGCCACAGCCAGTGCCAACGGTGGGGCCCTCCCCCGAAGCTCCAACGGCAACCAAACGGCGTCGTCCTCTAACAACGACAGTCTAACCATGACCGAGCACCAAGTGGCCAAGCTAATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTTCAGGGCAAGGGTCTCTGCCTGATGCCCATCTCTCTCGCCACCGCCATCTCCACTGCCACGTGTCATTCCAGGAACCCCTTGATCAACAACAGTCAAAACACCACAACCAATGGCAACAATAACCCCTTCATCGGGTCCAACGGCGACGGCCCGTCGTCTCCCAGCCTGTCAGTGTTGACGGTGCAGTCGGCTACGGTGGGTAACGGCGGTGCGGACAGCTCCGTCAAAGACGCTGCCTCCGTTTCGAAGCCGTGA 1479 0.5652 MIMQPCSREMQGINSLLNSSQFSLQDLHNNHHQIQNSQMHPPQLNHTASSHFDPTSHDDFLDQMLSNLPSCSWPDLNPKPLWDLINVNGTVPDMKPRDLPDDTPPPDAENVAFQYDDQANLASKFRNHQISSSSSPSTKSAAALMLRAQQQQQLLMSRGVAGAGGLGLSGAGDSGLLPMPLSLGGGDFERSRNDVGDGSSFKVPNPAGDASVQALYNGFAGSLHGGGQVSNQSPHFHHPQGQNFGASAAATTQAQTSGTPAQPRQRPRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMASEGGGGDCIQATASANGGALPRSSNGNQTASSSNNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLINNSQNTTTNGNNNPFIGSNGDGPSSPSLSVLTVQSATVGNGGADSSVKDAASVSKP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1275 492 CDD bHLH_AtbHLH_like 278 330 IPR045239 -
Glsi02g1275 492 MobiDBLite consensus disorder prediction 225 263 - -
Glsi02g1275 492 MobiDBLite consensus disorder prediction 34 51 - -
Glsi02g1275 492 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 424 - -
Glsi02g1275 492 MobiDBLite consensus disorder prediction 366 386 - -
Glsi02g1275 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
Glsi02g1275 492 MobiDBLite consensus disorder prediction 435 478 - -
Glsi02g1275 492 Gene3D - 268 330 IPR036638 GO:0046983
Glsi02g1275 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 333 IPR036638 GO:0046983
Glsi02g1275 492 MobiDBLite consensus disorder prediction 225 281 - -
Glsi02g1275 492 Pfam Helix-loop-helix DNA-binding domain 278 323 IPR011598 GO:0046983
Glsi02g1275 492 MobiDBLite consensus disorder prediction 435 492 - -
Glsi02g1275 492 SMART finulus 279 328 IPR011598 GO:0046983
Glsi02g1275 492 FunFam Transcription factor bHLH66 270 335 - -
Glsi02g1275 492 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1275 Glsi-ChrGlsi02 9386326 9389634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1275 247 491 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.548 1.38e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g1275 HLH 2e-09 No_clan