Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1273 ATGGGCCATTTCAGACAAGGAGTCTTGTACAAGAATTGGGCTGTGGGAACCCTAACCTTTGAAAGAGGCCGTTCTATATACCTTCCATTCCTCCCTCGTCGTCTTCCACCTGCAGCGCCTGAGAGATCTGTCGCCTCCATCCCCTTCAGCAACGAGCAAACTTTTCATCTCAAAGACAGTAAAATAATGTCAGGAGAAGAAGCTATAGCAGTACCTGCTGAGGTTTCAGCACCCCTAGGCGAGAGTATGGACATAATGACAGCCTTACAGCATGTTCTGAGGAAGTCCCTAGCTCATGGGGGTCTTGCTCGAGGTCTCCATGAAGGTGCCAAGGTGATTGAAAAGCATGCTGCGCATCTCTGCGTGCTAGCTGAGGACTGTGACCAGCCAGATTATGTTAAACTGGTCAAGGCACTTTGTGCTGATCATAACGTAAAGTTGATGACTGTTGCCAGTGCTAAAACTCTTGGTGAATGGTCTGGTTTGTGCAAGATTGATTCTGAGGGCAAAGCAAGGAAAGTTGTTGGCTGCTCCTGTGTTGTTGTGCAGGATTTTGGGGAGGAGTCACCGGCATTAGATATTGTTCAGCAATATATTAAGGCTCAATAA 609 0.4745 MGHFRQGVLYKNWAVGTLTFERGRSIYLPFLPRRLPPAAPERSVASIPFSNEQTFHLKDSKIMSGEEAIAVPAEVSAPLGESMDIMTALQHVLRKSLAHGGLARGLHEGAKVIEKHAAHLCVLAEDCDQPDYVKLVKALCADHNVKLMTVASAKTLGEWSGLCKIDSEGKARKVVGCSCVVVQDFGEESPALDIVQQYIKAQ 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1273 202 FunFam 40S ribosomal protein S12 68 202 - -
Glsi02g1273 202 Gene3D - 70 202 IPR029064 -
Glsi02g1273 202 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 88 181 IPR004038 -
Glsi02g1273 202 PANTHER 40S RIBOSOMAL PROTEIN S12 73 201 - -
Glsi02g1273 202 PRINTS Ribosomal protein S12E family signature 147 168 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi02g1273 202 PRINTS Ribosomal protein S12E family signature 172 185 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi02g1273 202 PRINTS Ribosomal protein S12E family signature 92 105 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi02g1273 202 PRINTS Ribosomal protein S12E family signature 106 122 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi02g1273 202 ProSitePatterns Ribosomal protein S12e signature. 88 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Glsi02g1273 202 SUPERFAMILY L30e-like 82 200 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1273 Glsi-ChrGlsi02 9362496 9364972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1273 81 202 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 70.492 2.87e-62 188