Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1270 ATGGCTTTTACACCTATCGCCTTCTTCTTCTTCTTCTGCTTTGTCTTCTTTCTTCCTTTCATTTATCATTCTTCTGCAGATACCTTCTCCTGGGTTAGAGCCGCTTATTATTATTCTGGCAGTTTTCATGCTGCCTTATATGGTCCACCTGAAAGGGCTAATACTGATCATGGTATTCAAGAGTGGAGGAAAAGGGGATTTTCATCTAGCAAGCTCCTTATTGGCTTGCCTTATCATGGATATGCATGGACACTGATGGATCCAGGAAACAATGCCGTGGGAGAACTGGCCTCAGGACCTGCTCTTACTAAAGATGGTTCTATGGGTTACAAGTTGATAAAAAGTTATATTAGAAGTTTTGGCGAGGGATCTGTTGCAGAGTATAATGCTAGTTATGTGGCGAACCAGTTCAAAGTTGCATCAACTTGGATTAATTTCGACGATGTGGAGGCAATCAGGGCTAAAGTTTCTTATGCCAAGAGAAATGGGCTACTTGGTTACAATGTGTTCCAAGTGGCCAATGACGAAAATTGGGTCCTTTCAAGTACAGCTCAAGATGTAGAAGGAGGCCATCATAAAAGGGGGTTATTGGGAATTGTTCTACCAACAACTCTGACCGTCATACTGATACTGCTATTGGGAATAATATCTTGCTACTATCACAAAGGAATTGTAGCTATTGTTACAACAATATTATGTAAACTCAAGAGATATTTATCAGCAGCTGAAAAGACTATTGAGGAAAATGCTTCTGACCTGCTAGTGTTCAAGTATGCTACAATTAAAGTGGCCACGTATAATTTTTCAAACAACAATAAGCTTGGAGAGGGGGGTTTTGGCACAGTATACAAGGGTAAATTAAGGAAGGGACAGGAAATGGCAGTGAAAAGGCTCTCAAAAACTTCAAGTCAAGGCCTTGAAGAATTCAAAAACGAGGTCACTCTTACAGCAAAACTACAACATGTGAATTTAGTTAGACTTCTGGGATACTGCACTGAGAGAAATGAGAAGATGTTGATCTACGAATACCTCCCAAACAGAAGCTTAGATCATTTCCTCTTCGAAATTGATCTTGATGCAGATCCAAGAAAATCAATTCTTTTGGACTGGAAGAAACGTGTCAACATCATTGAAGGGATTACACAAGGTCTTCTTTATCTCCAAGAGTATTCAAACTTTACTATAATCCACAGAGATCTGAAAGCCAGTAATGTTTTGTTGGATCATGAAATGAATCCCAAGATATCTGATTTTGGAATGGCTAGAATTTTCAGAAAAGATGAAATAGAAGCAAACACAGGAAGGATAGTTGGAACATATGGATACGTGCCTCCTGAGTATGTGAGAAGTGGCACATACTCAATGAAGTATGATGTTTATAGTTTTAGAGTTCTTCTCTTGCAAATCATTAGCGGAAAGAGGACCTCATGTTACTACGGTACACATGAAAATATGAACCTTTTGGAATATGCATATGAGCTATGGAAAGAAGGGAAAGGCGTGGAGTTTATTGATCTGTCATTGGATGACACAAAATCGCCTTGTAAAATCATGAGATGCATGCAGGTAGCTTTGTTGTGCGTCCAGGAAAATCCAACAGATAGACCTACCATGTTAGAAGTCTATTCAGCTCTAAAAAATGAAGCTGCAATTGGTACTCCCAAAATGCCTGCATTTTCAATTAAAAGAGATAAAGATGCAGAAGAAACATGTCAATCCAGGAGCAAATTTTCTTCAACCAATGATGTAACAATTTCTCAGATGGTACCTAGATGA 1776 0.3891 MAFTPIAFFFFFCFVFFLPFIYHSSADTFSWVRAAYYYSGSFHAALYGPPERANTDHGIQEWRKRGFSSSKLLIGLPYHGYAWTLMDPGNNAVGELASGPALTKDGSMGYKLIKSYIRSFGEGSVAEYNASYVANQFKVASTWINFDDVEAIRAKVSYAKRNGLLGYNVFQVANDENWVLSSTAQDVEGGHHKRGLLGIVLPTTLTVILILLLGIISCYYHKGIVAIVTTILCKLKRYLSAAEKTIEENASDLLVFKYATIKVATYNFSNNNKLGEGGFGTVYKGKLRKGQEMAVKRLSKTSSQGLEEFKNEVTLTAKLQHVNLVRLLGYCTERNEKMLIYEYLPNRSLDHFLFEIDLDADPRKSILLDWKKRVNIIEGITQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNPKISDFGMARIFRKDEIEANTGRIVGTYGYVPPEYVRSGTYSMKYDVYSFRVLLLQIISGKRTSCYYGTHENMNLLEYAYELWKEGKGVEFIDLSLDDTKSPCKIMRCMQVALLCVQENPTDRPTMLEVYSALKNEAAIGTPKMPAFSIKRDKDAEETCQSRSKFSSTNDVTISQMVPR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1270 591 Pfam Glycosyl hydrolases family 18 27 175 IPR001223 GO:0005975
Glsi02g1270 591 Gene3D - 82 146 IPR029070 -
Glsi02g1270 591 Gene3D Glycosidases 20 190 - -
Glsi02g1270 591 SUPERFAMILY Protein kinase-like (PK-like) 252 559 IPR011009 -
Glsi02g1270 591 SUPERFAMILY (Trans)glycosidases 39 193 IPR017853 -
Glsi02g1270 591 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
Glsi02g1270 591 ProSiteProfiles Protein kinase domain profile. 268 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1270 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Glsi02g1270 591 MobiDBLite consensus disorder prediction 573 591 - -
Glsi02g1270 591 Gene3D Transferase(Phosphotransferase) domain 1 344 556 - -
Glsi02g1270 591 CDD STKc_IRAK 274 547 - -
Glsi02g1270 591 FunFam Uncharacterized protein 243 343 - -
Glsi02g1270 591 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 178 587 - -
Glsi02g1270 591 MobiDBLite consensus disorder prediction 570 591 - -
Glsi02g1270 591 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 191 IPR001223 GO:0005975
Glsi02g1270 591 FunFam Uncharacterized protein 344 557 - -
Glsi02g1270 591 Pfam Protein tyrosine and serine/threonine kinase 271 544 IPR001245 GO:0004672|GO:0006468
Glsi02g1270 591 Gene3D Phosphorylase Kinase; domain 1 228 343 - -
Glsi02g1270 591 SMART serkin_6 268 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1270 Glsi-ChrGlsi02 9335462 9340064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1270 233 591 Receptor kinase-like Gene Family AT4G11530 50.000 9.07e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi02g1270 PK_Tyr_Ser-Thr 3.8e-44 CL0016