Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1242 ATGCTGGACGGGGAATCCTCTGTCTTAGCCGATTCCTCGGCTGTCGAGCCGTCTTCAAGTGAATCTGATCATTTTCGGTCTTTAACTCTCCATGAAGTGAATGATCAGACGGAGTCGGTTTCCGGAGACCAACATGTGAAGAAAGATCCGAGGAAAATTGCTAGAAAGTATCAGTTGGAGTTTTGCAAAAAAGCTTTGGAGGAAAATATAATTGTGTATTTGGGGACAGGTTGTGGGAAGACCCACATTGCTGTGCTGCTTATGCACGAGATGGGACACTTGATTCGGAAGCCTCAGAAGAACATATGTGTCTTTCTTGCCCCTACAGTGGCTTTAGTTAACCAGCAAGCAAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGATTTTCTGTGGGAGCTCAAAGCGCTTGAAAAGCCATCATGATTGGGAGCAAGAGATGGAACAATATGAGGTTCTTGTTATGACCCCGCAGAGACTATTTCACAATTTATCCCACTGTTTCATTAAGATGGAGATGATTGCACTTTTAATTTTTGACGAATGCCATCATGCTCAAGTCAAAAGCAATCATCCTTATGCAGGAATCATGAAAGTCTTCTATAAAACTAATTCCGCAAAGCTTCCACGTATATTTGGCATGACTGCTTCTCCGGTTGTAGGAAAAGGTGCTTCTAGTGAAGTAAATCTAGCGAAAAGCATCAACAGTCTTGAGCACATACTTGACTCTAAGGTATACTCAGTCGAACCAAAAGAAGATTTGGATACTTTTGTGGTCACTCCTGTGGTTAAGATGTATTATTATGGTCCTACTGCAAGCAGGACAACTAGTTTGTATATGAATTACTATGCCAAACTTGGGGAGATTAAATGTCAGTGCATAGAAAGCCTTAAAAGGAGTATGGAAGATCACCAGAAACGAAGAAACACAAAGAAGCTTCTGAACCGAATGCATGATAATGTGGTTTTCTGCCTGGGAGCTCTTGGCATTTGGGGAGCATTGCAAGCTAGTCGTTTCCTTTTGAGCGGTGATCACTCTAAGAGGCATGAATTAGTGGAGGTGGAAGAAAATTCAAGTGATGACTCTTTCTGTGATAAATATCTAGCACAGGCAGTTGACTTCTTTACTTCTGAATGCATGAACGGTGACGACGGTGTATCTGATCCGTCTTCTGTGGAAATCTTAAAAGAGCCTTTTTTCTCGGGAAAGCTTCTGTGCCTTATAGGGGTACTGTCTTCATTTAGGTTACAACCAAATATGAAATGTATAGTTTTTGTGAATAGAATTGTTACTGCAAGATCCCTGTCATACCTATTACAACAGCTCAAAATTCTAGCACTCTGGAAAAGTGATTTTCTGGTAGGAGTTCATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTCTTGAGAAGTTTCGCTCTGGAGAGTTGAATTTATTGGTTGCAACCAAAGTGGGAGAAGAAGGACTTGATATTCAAACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCAAGCTTTATACAATCAAGAGGTCGTGCACGTATGCCTCAATCAGAATATGCCTTTTTGGTGGACAGTGGCAATAAGAAGGATATAGACTTGATTGAGGGTTTTAAGAAAGATGAAGGCAGAATGAATGTGGAAATTGATAAACGCACATCCAATGAGACATTTATCATGCCTGAGGAAAGAATTTACAAAGTTAATTCATCTGGTGCTTCTGTCAGTTCCGGATATAGTATCTCATTAGTTCACCAGTATTGTTCCAAGCTTCCACATGATGAGTACTTTGACCCTAAGCCAAAATTTTTTTACTTTGATGATTTAGGAGGAACTGTCTGTCAGATAACTATGCCTTCCAATGCTCCCATAAATCAAATTGTCAGTATGCCGCAATTATCCTTGGAAGCTGCTAAGAGGGATGCTTGTTTGAAAGCAGTTGAAGAACTGCATAAATTAGGTGGCTTAAGTGACTGTCTGTTGCCAAAGCAAGATGATGCAAATCCAGAGGAGCAGGTTTCAGACTCTTCGGATTCAGATGCATATGAAGATGACAATTTACGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCATTTAGACATTCACGGTTGAACGAGGAGCAAACTGTCCATCTCTCCTCTTACTACGTAAAATTTAAACCCTCTCCAGAGGACAGGACCTATAAAGAGTTCGGCCTATTTATCAGGACAAATCTTCCTTTGGAGGCTGAGAAACTGGAAATTGATCTTCATCTTGCTCGTGGTAGGACTGTCATGACAAAATTTGTTCCATTTGGAGTTACAGAATTTTACAGAGATGAGATTAAGATGGCACAGAACTTTCAGGAGATGTTCCTCAAAATTATTCTTGACCGATCAGAATTTGTTCCTGAATTTGTACCCTTGGGTAAGAATGGTGTCCTTCAAACAAGCACTTCAACCTTCTATCTTTTGCTTCCAGTCATATTGCAAGACAATGAAAATGCTATGACAGTAGATTGGAAGACAGTGAGGAGATGTCTTTCTTCACCAATTTTCAGGCATCCAGAGGATACTGTAGATCTGAAAACGGTTCCTGCTGATATTAACCTGCAACTTGCTAATGGTTACAGAAATGCTAGAGATGTTGAGAATAGTTTAGTGTACACCCCACACAAGATGACGTTTTATTTTGTTACCCAAATTGTTCCTGAAAAGACTGGATGGAGTCCTTATAAAGCTTCGGGCACTTCAAGCTATGTGGATCACTTCTTTGAACAGTTTTCCATTCGTCTTAAATACCCTGGGCAACCGCTTCTCCGTGCAAAACCACTATTCAATCTGCGCAACTTGCTTCACAACCGAAAGCAAGAAGACACAGAAGCTCATGAACTGGAGGAATATCTCATTGATTTGCCACCTGAGCTTTGTCAACTGAAAATTATAGGCTTTTCAAAAGATATTGGTAGTTCCCTATCTTTGTTACCGTCAATCATGCATCGTCTTGGAAACTTACTGGTTGCAATTGAACTCAAGTACATGCTTTCTTCTTACTTCCATGGGGCTGCTGAAGTTAGTGCCCTCAGAGTTCTAGAGGCCCTGACCACTGAGAAATGTCAGGAGCGCTTTTCTCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTTGTGTTGCAAGCCATTTTTTTCTCATGAATGATAGCCTTCATGAAGGAGACCTTACAAGGAGGCGTTCAAATGTTGTCAATAATTCCAATTTGTTGAAGTTAGGTATTAGGCACAATTTGCAGGTGTACATTCGTGATCAGGCATTTGAACCTTCTAAGTTCTTTGCATTAGGCCGTCCTTGCCCAACAGTTTGTACCAAGGAAACTGAAGAGAGCATTCACTCTTGTTTAAATTCTGTAAAGGATCCAGGCCAAGGAATAGGAACTGATGTCTGTTGCAATAAAAATCACCACTGGCTACATAGGAAAACAATTGCTGATGTTATTGAAGCTCTTGTTGGAGCTTTCATAGTTGATAGTGGCTTTAAAGCTGCAACTGCATTTCTTAAATGGATTGGCATACAAGCTGATTTTGAAGCCTCACAAGTGTTCAATGCTTGCAGAGCAAGTATGAGCTATATTCCCCTTTCTGCTCATGTAGACATTGCTTCCCTTGAAGATAAGTTAGGATATCATTTTGTTCATAAGGGTCTGCTTCTTCAAGCATTTGTACATCCCTCTTACAATAAGCATGGTGGTGGATGCTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATACCTTTACTCAGCTTATCCAAAGCTAAAGCCTGGTCAATTAACAGATCTGAGATCAGTGTTTGTGAACAATAAGGCATTTGCCTATGTTGCAGTCGATAAAGATTTTCATAAATTTCTTTTATGTGATTCAAGTGATCTGTCTGATGCGATAAAAAAGTATGTGGACTACATTAAAGGACCTGTAATTGGTGGTATTGGTGGGCCAAAATCACCTAAGGCTCTGGGTGACTTGGTGGAATCTTGTCTTGGTGCCATTCTCCTTGATTCAGGTTTCAATTTGAGCAGTGTTTGGCAGATTATGACTTCATTCCTAGAGCCAATCATGAAATTCTCATCAAGCTTGCAGCTTAGTCCTATTAGGGATTTGCAAGAACTTTGCCAATCTCATAATTTGAATTTGAAGTTTCTGAAATCAAAAGCAGGCAGAATGTTCTCTGTTGAAGCCAAGGTTGTTGGGAAAGATGTATGTTCAACTATTTCAGCAACCGACGTGAATAAAAAAGAGGCTGCTAGAATGGCTTCGCAACTACTATTTTCAGAATTATTGTCTCAGGGCTTGAAACCTAAGTCAAAGTCTCTGGGAAAAATTCTCAAATCAACCTCTAAGAGGGAACCCGAACTTATTGGCTATGATGAAGCACCCATTGATGTAGCAGAAGCTACTATCATTGGGCCTATAATGGTTAAGGGAGATCAATGCAGCAATTTTAATCCAGAAATTTGCCCCATTGGTGAGGAAGTTGAAATATTTTCCCCAAGTTTAATACCTGTTAGCCAACAACTTCTATCTTCTTCCACTATAGGACGGCAGGGTGAGACCTTTGAAAATGATTGTGACAGTGATTCAAAGAGGGCAGATTGTTCATACAAAGGAACATATAGATCGCGATTGTATGAATTCTGTGCTGCCAATTGCTGGAAACCTCCTTCATTTGAATGCTGCAATGAGGAGGGACCAGACCACCTGAAGTTATTTACTTTCAAGGTGAGCTTGGAGATAGAAGATGCTCCAGATATGATTTTGGAGTGTGTTGGCACTCCTCAATCAAAGAAGAAAGATGCAGCAGAGCGTGCAGCTGAGGGTGCTTATTGGTATCTGCAACAGGAAGGTTACCTATTTGATGGTAATTGA 4953 0.4038 MLDGESSVLADSSAVEPSSSESDHFRSLTLHEVNDQTESVSGDQHVKKDPRKIARKYQLEFCKKALEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVNQQAKVIEDSTDFKVGIFCGSSKRLKSHHDWEQEMEQYEVLVMTPQRLFHNLSHCFIKMEMIALLIFDECHHAQVKSNHPYAGIMKVFYKTNSAKLPRIFGMTASPVVGKGASSEVNLAKSINSLEHILDSKVYSVEPKEDLDTFVVTPVVKMYYYGPTASRTTSLYMNYYAKLGEIKCQCIESLKRSMEDHQKRRNTKKLLNRMHDNVVFCLGALGIWGALQASRFLLSGDHSKRHELVEVEENSSDDSFCDKYLAQAVDFFTSECMNGDDGVSDPSSVEILKEPFFSGKLLCLIGVLSSFRLQPNMKCIVFVNRIVTARSLSYLLQQLKILALWKSDFLVGVHAGLKSMSRKTMNIILEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKDIDLIEGFKKDEGRMNVEIDKRTSNETFIMPEERIYKVNSSGASVSSGYSISLVHQYCSKLPHDEYFDPKPKFFYFDDLGGTVCQITMPSNAPINQIVSMPQLSLEAAKRDACLKAVEELHKLGGLSDCLLPKQDDANPEEQVSDSSDSDAYEDDNLRGELHEMLVPSAFRHSRLNEEQTVHLSSYYVKFKPSPEDRTYKEFGLFIRTNLPLEAEKLEIDLHLARGRTVMTKFVPFGVTEFYRDEIKMAQNFQEMFLKIILDRSEFVPEFVPLGKNGVLQTSTSTFYLLLPVILQDNENAMTVDWKTVRRCLSSPIFRHPEDTVDLKTVPADINLQLANGYRNARDVENSLVYTPHKMTFYFVTQIVPEKTGWSPYKASGTSSYVDHFFEQFSIRLKYPGQPLLRAKPLFNLRNLLHNRKQEDTEAHELEEYLIDLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLGNLLVAIELKYMLSSYFHGAAEVSALRVLEALTTEKCQERFSLERLEVLGDAFLKFCVASHFFLMNDSLHEGDLTRRRSNVVNNSNLLKLGIRHNLQVYIRDQAFEPSKFFALGRPCPTVCTKETEESIHSCLNSVKDPGQGIGTDVCCNKNHHWLHRKTIADVIEALVGAFIVDSGFKAATAFLKWIGIQADFEASQVFNACRASMSYIPLSAHVDIASLEDKLGYHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSVFVNNKAFAYVAVDKDFHKFLLCDSSDLSDAIKKYVDYIKGPVIGGIGGPKSPKALGDLVESCLGAILLDSGFNLSSVWQIMTSFLEPIMKFSSSLQLSPIRDLQELCQSHNLNLKFLKSKAGRMFSVEAKVVGKDVCSTISATDVNKKEAARMASQLLFSELLSQGLKPKSKSLGKILKSTSKREPELIGYDEAPIDVAEATIIGPIMVKGDQCSNFNPEICPIGEEVEIFSPSLIPVSQQLLSSSTIGRQGETFENDCDSDSKRADCSYKGTYRSRLYEFCAANCWKPPSFECCNEEGPDHLKLFTFKVSLEIEDAPDMILECVGTPQSKKKDAAERAAEGAYWYLQQEGYLFDGN 1650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1242 1650 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 588 678 IPR005034 GO:0016891
Glsi02g1242 1650 FunFam Endoribonuclease dicer-like 1 1216 1385 - -
Glsi02g1242 1650 FunFam Endoribonuclease dicer-like 1 395 558 - -
Glsi02g1242 1650 SUPERFAMILY RNase III domain-like 1032 1194 IPR036389 GO:0004525|GO:0006396
Glsi02g1242 1650 Gene3D Dicer dimerisation domain 584 680 IPR038248 -
Glsi02g1242 1650 SMART ultradead3 50 255 IPR014001 -
Glsi02g1242 1650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 538 IPR027417 -
Glsi02g1242 1650 SMART helicmild6 434 524 IPR001650 -
Glsi02g1242 1650 SMART riboneu5 1237 1387 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 SMART riboneu5 1032 1201 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 FunFam Endoribonuclease dicer-like protein 49 287 - -
Glsi02g1242 1650 SUPERFAMILY dsRNA-binding domain-like 1346 1455 - -
Glsi02g1242 1650 Pfam DEAD/DEAH box helicase 56 201 IPR011545 GO:0003676|GO:0005524
Glsi02g1242 1650 MobiDBLite consensus disorder prediction 669 692 - -
Glsi02g1242 1650 Gene3D - 398 559 IPR027417 -
Glsi02g1242 1650 MobiDBLite consensus disorder prediction 1 24 - -
Glsi02g1242 1650 Pfam Dicer dimerisation domain 588 673 - -
Glsi02g1242 1650 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 561 IPR001650 -
Glsi02g1242 1650 SUPERFAMILY dsRNA-binding domain-like 1566 1645 - -
Glsi02g1242 1650 Gene3D Ribonuclease III domain 1218 1391 IPR036389 GO:0004525|GO:0006396
Glsi02g1242 1650 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1391 1457 IPR014720 -
Glsi02g1242 1650 SUPERFAMILY PAZ domain 882 981 IPR036085 GO:0005515
Glsi02g1242 1650 Gene3D - 54 304 IPR027417 -
Glsi02g1242 1650 ProSiteProfiles PAZ domain profile. 852 983 IPR003100 GO:0005515
Glsi02g1242 1650 FunFam Endoribonuclease dicer-like 1 583 679 - -
Glsi02g1242 1650 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 237 IPR014001 -
Glsi02g1242 1650 SMART PAZ_2_a_3 861 1009 IPR003100 GO:0005515
Glsi02g1242 1650 Pfam PAZ domain 881 1004 IPR003100 GO:0005515
Glsi02g1242 1650 ProSiteProfiles Ribonuclease III family domain profile. 1222 1364 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 PANTHER DICER-RELATED 67 1456 - -
Glsi02g1242 1650 ProSiteProfiles Ribonuclease III family domain profile. 1034 1181 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 SMART DRBM_3 1567 1641 IPR014720 -
Glsi02g1242 1650 SMART DRBM_3 1392 1456 IPR014720 -
Glsi02g1242 1650 SUPERFAMILY RNase III domain-like 1220 1383 IPR036389 GO:0004525|GO:0006396
Glsi02g1242 1650 CDD DSRM_DCL_plant 1573 1642 - -
Glsi02g1242 1650 CDD RIBOc 1238 1386 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 CDD RIBOc 1033 1191 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 Gene3D - 1573 1642 - -
Glsi02g1242 1650 Coils Coil 1393 1413 - -
Glsi02g1242 1650 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1568 1640 - -
Glsi02g1242 1650 CDD DEXHc_dicer 52 251 - -
Glsi02g1242 1650 Gene3D paz domain 875 981 - -
Glsi02g1242 1650 Gene3D Ribonuclease III domain 1028 1193 IPR036389 GO:0004525|GO:0006396
Glsi02g1242 1650 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1566 1642 IPR014720 -
Glsi02g1242 1650 ProSitePatterns Ribonuclease III family signature. 1257 1265 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 Pfam Ribonuclease III domain 1257 1364 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 Pfam Ribonuclease III domain 1048 1181 IPR000999 GO:0004525|GO:0006396
Glsi02g1242 1650 Pfam Helicase conserved C-terminal domain 417 522 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1242 Glsi-ChrGlsi02 8895055 8926737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1242 422 521 Eukaryotic Initiation Factors Gene Family AT1G72730 31.000 3.89e-07 52.8