Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1240 ATGGAGATCTGTAAATGCTTGTACTTTAATCTTCTCGCCACTTCCATGTTCTTTTTAGCAGTTTTGGCAATCGATCCCTATTCAAAGGCGCTCCTGAACCTCAAATCTGAACTTGTAGATGATGATGACATTTTACATGACTGGGTAGTGCCATCTGGGGGAAACTTTACCAGAAAATCCTATGCATGTTCCTGGTCCGGTATCAGGTGTAACAAGGACTCAACAATTGTGACTGCAATAGACCTGTCCATGAAGAAACTGGGAGGTGTAATGTCAGGGAAGCAGTTTAGTGTCTTCACAAAGCTTGCTGATTTAAACCTGAGCAACAATTTTTTCTCTGGGCAGATTCCGGTGGCAATTTTTAACCTCACCAGTCTAAGAAGCTTGGATATCAGCAGAAACAATTTTTCTGGTCACTTCCCAGGTGAAATTTCCGGCCTTCAAAATTTAGTTGTGCTTGATGCCTTTAGCAATAGCTTTTCAGGGTCATTATCCGCTGAACTTTCCCAGCTTGAACATCTCAAGGTTCTCAATCTGGCAGGAAGTTACTTCAAAGGACCAATTCCATCTGAATATGGCTCTTTTAGAAGTCTTGAGTTTCTTCATCTTGCAGGAAATTTTCTCTCGGGAAATATACCTCAGGAACTGGGTAACCTCAAAACAGTAACCCACATGGAGATTGGCTACAACTCTTACCAGGGTTCGATTCCATCCCAATTAGGTAATATGAGCCAGCTTCAGTATCTTGATATAGCTGGTGCAAATTTATCCGGCCCAATACCAACGCAGCTCTCCAATCTCACGAATTTGCAATCACTTTTTCTGTTCACAAACGAGCTCACGGGATCAATACCAAGTGAATTTAGCAAAATCGCACCTCTCATAGATTTAGATCTTTCTGATAACCTCATTTCTGGGTCCATTCCTGAAAGCTTTTCAGAGTTAAAGAACCTAAGATTGCTCAGTCTCATGTACAATGATATGAATGGCACTCTTCCTGAAGGCATTGCACAACTTCCATCCTTAGAAACTCTTCTCATTTGGAACAATCGCTTTTCTGGATTACTTCCACAGAGCATGGGCAGGAACTCAAAACTCAAATGGGTGGATGTTTCCACAAACAATTTGATTGGCAGCATACCACCAGACATTTGTGCGAGAGGAGTACTATTTAAACTAATCCTGTTTTCAAACAGATTTACAGGTGGTCTTTCACCGTCACTCTCCAATTGTTCTTCCCTTGTTCGCCTTCGACTAGAAGATAATTCGTTTTCTGGAAAGATCTCTTTGAAATTCAGCCATCTTCCTGATATCTCTTATGTTGATCTGTCCTGGAACAAGTTTGTTGGTGGAATTCCCTCTGATATTTCCCAAGCTATCAAACTTGAGTATTTTAATGTCACTCATAATCTGCAATTACGAGGCATTATCCCTGCACAAATATGGTCTTTGCCGCTTCTTCAAAATATTTCAGCATCTTCTTGTGGTATTTTAGGCTATCTTCCGCCATTTAATTCCTGCAAATCGATTAATGTTATTGAACTGGATAGGAACAACTTATCCGGAAGTGTCCCGAGCAGCGTTTCCAACTGCCAAGCTCTTGAGTATATTAACTTATCCAACAATAATTTATCAGGTCGTATACCTGAGGAGCTTGCAAGTATCACTGTTCTTGGTGTTTTAGACCTATCAAATAATTACTTTAATGGCCCAATACCAGCAAAGTTTGGTAGTTCTTCAAGTTTACAACTGCTTAATGTCTCTTTCAACAATATATCCGGTTCGATTCCCAGAGGAAAGTCCTTCAAGTTGATGGATAGCAGTGCATTTGTTGGAAATTCAGAGCTATGTGGAGCACCTTTCCGACCATGTCCTCAATCAGTCGGAATACTGGGAAGCGAAGGCACGTGGAAGCTTGCACACGTTATGCTACTCTGTGCTGGGTTGCTTATACTACTTGCAGCATTAGCTTTTGGAATATTTCATTTTAAACAGGGAATTAAAAGTCAATGGAAGATGGTCTCATTTGTTGGACTCCCTCAATTCACAGCAAATGACGTTTTGACAAGCTTAGGCTCCACAGAATCCAGAGAAGCACCAGCCCCATCACCGTCAGTTTCAAAAGCAGTTCTGCCTACAGGAATAACAGTTTTATTTAAGAAGATTGAATTGGAAGCGAGGAGCATCAAGATTGTGTCAGAATTGATAATGCGACTAGGAAATGCAAGGCACAAGAACTTAATCAGACTGTTGGGCTTCTGCCATAACCAGAATCTAGCTTATCTTTTGTACGATTACTTACCCAATGGGAATTTGGCTGAGAGAATTGGAATGAAAAGGGATTGGGCTACTAAATTCAGAATTGTAGTTGGCATTGCAAGGGGTCTTTGCTTCCTTCACCATGAATGTTACCCTGCTATAGCCCATGGAGACTTGAAGTCGAGCAATATCGTATTTGATGAAAATATGGAACCCCACTTGGCGGAATTTGGGTTCAAATATGTGTTGAAGTTGAGCAAAGGCTCGTCGCCAACCACAATTTCTCGGTGGGAAACAGAGTACAACGAAAGCATGAAAGAAGAACTCTACATGGATGTCTACAATTTTGGGGAAATGATTCTGGAAATTTTATCTGATGGAAGGTTGACAAATGCAGCAGATAGCATTCACAGCAAACCAAGGGAGATTCTTCTAAGAGAAATTTACAATGAGAATGAATTGGGTTCTGCTAGTTCATTGGAAGAGATAAATCTGGTTCTTGAAGTTGCGCTGCTTTGCACTAGAAATAGGCCATTTGATCGGCCAACCATGGAAGACGCTTTGAAGCTTTTATCAGGGGCTAAGCAACTAGTAGATAGCAGAACTTTGGACGGATAG 2877 0.4105 MEICKCLYFNLLATSMFFLAVLAIDPYSKALLNLKSELVDDDDILHDWVVPSGGNFTRKSYACSWSGIRCNKDSTIVTAIDLSMKKLGGVMSGKQFSVFTKLADLNLSNNFFSGQIPVAIFNLTSLRSLDISRNNFSGHFPGEISGLQNLVVLDAFSNSFSGSLSAELSQLEHLKVLNLAGSYFKGPIPSEYGSFRSLEFLHLAGNFLSGNIPQELGNLKTVTHMEIGYNSYQGSIPSQLGNMSQLQYLDIAGANLSGPIPTQLSNLTNLQSLFLFTNELTGSIPSEFSKIAPLIDLDLSDNLISGSIPESFSELKNLRLLSLMYNDMNGTLPEGIAQLPSLETLLIWNNRFSGLLPQSMGRNSKLKWVDVSTNNLIGSIPPDICARGVLFKLILFSNRFTGGLSPSLSNCSSLVRLRLEDNSFSGKISLKFSHLPDISYVDLSWNKFVGGIPSDISQAIKLEYFNVTHNLQLRGIIPAQIWSLPLLQNISASSCGILGYLPPFNSCKSINVIELDRNNLSGSVPSSVSNCQALEYINLSNNNLSGRIPEELASITVLGVLDLSNNYFNGPIPAKFGSSSSLQLLNVSFNNISGSIPRGKSFKLMDSSAFVGNSELCGAPFRPCPQSVGILGSEGTWKLAHVMLLCAGLLILLAALAFGIFHFKQGIKSQWKMVSFVGLPQFTANDVLTSLGSTESREAPAPSPSVSKAVLPTGITVLFKKIELEARSIKIVSELIMRLGNARHKNLIRLLGFCHNQNLAYLLYDYLPNGNLAERIGMKRDWATKFRIVVGIARGLCFLHHECYPAIAHGDLKSSNIVFDENMEPHLAEFGFKYVLKLSKGSSPTTISRWETEYNESMKEELYMDVYNFGEMILEILSDGRLTNAADSIHSKPREILLREIYNENELGSASSLEEINLVLEVALLCTRNRPFDRPTMEDALKLLSGAKQLVDSRTLDG 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1240 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Glsi02g1240 958 PANTHER UNNAMED PRODUCT 169 882 - -
Glsi02g1240 958 SUPERFAMILY L domain-like 366 624 - -
Glsi02g1240 958 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Glsi02g1240 958 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Glsi02g1240 958 Pfam Leucine rich repeat 511 567 IPR001611 GO:0005515
Glsi02g1240 958 FunFam Leucine-rich repeat receptor-like protein kinase TDR 767 952 - -
Glsi02g1240 958 Gene3D Transferase(Phosphotransferase) domain 1 767 955 - -
Glsi02g1240 958 Gene3D Phosphorylase Kinase; domain 1 702 766 - -
Glsi02g1240 958 SUPERFAMILY RNI-like 80 401 - -
Glsi02g1240 958 Gene3D Ribonuclease Inhibitor 392 628 IPR032675 -
Glsi02g1240 958 FunFam Leucine-rich repeat receptor-like protein kinase 24 189 - -
Glsi02g1240 958 Pfam Protein tyrosine and serine/threonine kinase 715 942 IPR001245 GO:0004672|GO:0006468
Glsi02g1240 958 SMART serkin_6 685 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1240 958 FunFam Leucine-rich repeat receptor-like protein kinase TDR 312 626 - -
Glsi02g1240 958 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Glsi02g1240 958 Gene3D Ribonuclease Inhibitor 189 291 IPR032675 -
Glsi02g1240 958 FunFam Leucine-rich repeat receptor-like protein kinase TDR 682 766 - -
Glsi02g1240 958 FunFam Leucine-rich repeat receptor-like protein kinase TDR 190 296 - -
Glsi02g1240 958 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Glsi02g1240 958 SUPERFAMILY Protein kinase-like (PK-like) 705 944 IPR011009 -
Glsi02g1240 958 Gene3D Ribonuclease Inhibitor 292 391 IPR032675 -
Glsi02g1240 958 ProSiteProfiles Protein kinase domain profile. 671 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1240 Glsi-ChrGlsi02 8871945 8875296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1240 6 948 Receptor kinase-like Gene Family AT5G51350 54.927 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi02g1240 Pkinase 2e-16 CL0016