Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1230 ATGGCTTTTCATGATAATCTCCCTTACGAACTGGCTTTCACGGACGAGCAAAAGTTAACCCAAGACAGAGACATGCAAAGGCTGCTACCACTTCTCACTACCAACACCGGCGGCGGAGGAGGAGGAGGTGGAGTTGCCCCGACTTGGCTCAGCAACGCCAATCTCCGGCAGCAGAGTGTCCTCCACTTGCAACCAGACTCGAGCACGCAAACCGAGGATGTCCGGGAGAAGATACTTTACGGTAAAAGAATCATCGATCGCAGTGATCGGAACCGGGCCCACAGTAATAGCGAATCCGAGGATTTAGCGGAATACAAAGCTGACATTCTGGGACACCCTTTGTCCGACCAGCTTCTATCGGCTCATGTTTCGTGTTTAAGGATTGCCACGCCGGTAGACCAGCTTGCTAGGATCGACGCTCAGATGGAACAATCACAGAGCGTGGTGGAAAAGTACTCTGGACTCGCAAATGGAGTAGTGAATGAGAAGGAGCTTGATCAGTTCATGACACATTATGTTCTATTGCTCTGTGCTTTGAAAGAACAACTGCAACAACATGTCCGTGTTCATGCTATGGAAGCAGTAATGGCCTGTTGGGAGCTCGAGGAGTGTCTACAGAGCTTGACTGGTGTATCTTCAGCCGAAGGAACAGGTGCAACAATGTCCGATGATGAAGATGACCATGCAGAGAGCAATGCCAACTTATATGAAGGTGGCCTAGATGGTGCTGATAGCCTTGGCATCGGTCCTCTTGTTCCCACTGAAAGTGAAAGATCTCTGATGGAGCGTGTGAGGCATGAGTTGAAGCATGAACTGAAACAGGATTATAAGGAGAAGATTGTAGATGTACGAGAAGAAATTCATCGAAAGAGGCGAGCTGGGAAGCTCCCGGGGGACACCACGTCCCTTTTGAAAGCATGGTGGCAATCACATTCTAAGTGGCCCTACCCATCCGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCCTGGAATTAAAGCAGATAAACAACTGGTTTATAAATCAGCGTAAAAGGAATTGGCATACTAATATATCATCTTCTAATGCCTCCAAAAACAAGCGTAAGAGCGCAGGGGAAACCAGTAACCAGAGCTTCAAGTGA 1125 0.4853 MAFHDNLPYELAFTDEQKLTQDRDMQRLLPLLTTNTGGGGGGGGVAPTWLSNANLRQQSVLHLQPDSSTQTEDVREKILYGKRIIDRSDRNRAHSNSESEDLAEYKADILGHPLSDQLLSAHVSCLRIATPVDQLARIDAQMEQSQSVVEKYSGLANGVVNEKELDQFMTHYVLLLCALKEQLQQHVRVHAMEAVMACWELEECLQSLTGVSSAEGTGATMSDDEDDHAESNANLYEGGLDGADSLGIGPLVPTESERSLMERVRHELKHELKQDYKEKIVDVREEIHRKRRAGKLPGDTTSLLKAWWQSHSKWPYPSEEDKARLVQETGLELKQINNWFINQRKRNWHTNISSSNASKNKRKSAGETSNQSFK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1230 374 MobiDBLite consensus disorder prediction 213 236 - -
Glsi02g1230 374 ProSiteProfiles 'Homeobox' domain profile. 287 350 IPR001356 GO:0003677
Glsi02g1230 374 SUPERFAMILY Homeodomain-like 289 355 IPR009057 -
Glsi02g1230 374 CDD homeodomain 290 351 IPR001356 GO:0003677
Glsi02g1230 374 SMART HOX_1 289 354 IPR001356 GO:0003677
Glsi02g1230 374 ProSiteProfiles ELK domain profile. 267 287 IPR005539 GO:0003677
Glsi02g1230 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 363 - -
Glsi02g1230 374 Gene3D - 285 365 - -
Glsi02g1230 374 MobiDBLite consensus disorder prediction 350 374 - -
Glsi02g1230 374 SMART KNOX2_2 155 210 IPR005541 GO:0003677|GO:0005634
Glsi02g1230 374 FunFam homeobox protein knotted-1-like 3 isoform X1 288 349 - -
Glsi02g1230 374 Coils Coil 273 293 - -
Glsi02g1230 374 SMART KNOX1_2 103 147 IPR005540 GO:0003677|GO:0005634
Glsi02g1230 374 Pfam KNOX1 domain 105 145 IPR005540 GO:0003677|GO:0005634
Glsi02g1230 374 Pfam KNOX2 domain 160 209 IPR005541 GO:0003677|GO:0005634
Glsi02g1230 374 Pfam Homeobox KN domain 307 346 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1230 Glsi-ChrGlsi02 8697468 8701476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1230 103 369 Homeobox Transcription Factor Family AT5G11060 78.309 1.50e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi02g1230 KNOX2 4.7e-16 No_clan