Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1227 ATGGCGTTTGATCAAAATCCCATTCCGAAAGATCTACGGCCATTAAACGTAGCTCGAACTATTGCTGAAGAGCCCCTCATTGGACTGCCGACTACAACGGGTCGAACTGCAGAAGGTTTTCCTCCAACTTCAGTTCGTGAGGTCGGAAGCCCCGGGGCTGTGCCCCTTTTCTACCCAGCACCTGTCTCCGATGCTGGGTTTGTTGGCGTGGGATATGGAAATATGTCATCGAGCACTGCTACCTGGTGCGTTCGTCCGGCTGTTCCAATTAGGCAGCCGACTATGAACCCTGCTGCTGGGTTTAATTATAGTCCTAAGTTTGGCAATCGGACTGGTGGTGGCAACGCTGTTGATCTTTTAAGTAGCCTCGTGGCAAACGGACCTGGTTATGCGCCGATTTTGGGTAACTGGGTTGGGGCCAATAACTTGGATAAGGCTGGCGATGATGCAGCTAATGGGTTTGACTGTAGCTCTGTTCAGGGCTACAGAGTCACCGGCAATGCCATTGCCAGTGATCCGGTAGGCAGTATTGCAGCAACTGGGATTGCTTATAGTCCCACTATTGGCCAGCGGCAGGTGGGGAATGGGGCACATCAGGCGAGCGAGGAGGGTGGGGATGATTCCTTGTCAGGAAGAAAAGTGAAGTTTTTGTGCAGTTATGGTGGGAAGATTTTACCTAGACCTAGTGATGGAATGTTGAGATATGTTGGAGGGCAGACGAGAATTATTAGTGTTAAGAGATCTGTGAGCTTCAATGAACTGATGCAAAAGATGGTTGATACATATGGTCAACCTGTGGTTATAAAGTATCAGCTCCCTGATGAGGATCTTGATGCCTTGGTGTCGGTTTCGTGCCCAGATGATCTTGAAAATATGATGGATGAATATGAAAAGTTAATTGAGAGATCTTCTGATGGTTCAGCTAAATTAAGGATTTTTCTGTTTTCTGCTTCAGAACTTGATACTTCTGGTGTGATGCAGTTAGGAGATTTACATGATAGTGGGCAGAAATATGTTGATGCTGTGAATGGAGCTACAGTTGGAATTAGTTGTGGGATCTTAAGGAAAGAGAGTATCACAAGTGCAACTTCAACTCAAAATTCTGATTTTAGTGGGATAGAGGCTCTTGATAGCTCAACTGCTGGTCCAGGGGATATAAGTGAAGCACCCTCATCTTGCATGTTATCACCCAAGGAGAATTTGGCAGCTTCTCATGACATTGGTACAAAATTGATGGTGCCAGATCACATTCCAATAGTTTACTCAGATGCTTCTGCAAATCCAGTGGGCATACCTGTGACTAAGTTTGGTCCAACCCACACTTTACCTTTCCAGAATGAGGTTGAGGTAGAAAGGTCTGTGCCTGCTACTTTACCACAGCAGCAATTTGGATTGCAGAAATCAGGAATGGACATTCCATCACACGCACCTTATTCACAACCTTTTGTTGATCCACGCCAGGAAGTTTTGAACCATGCAGATTATTTCCAGCTGCCTCCTCAGACAGGGTTCCCAAATTCTCAACTTTTAGGGAAACCTGGGTCTATCTTCACCCAACAGCAGTTTCATGGTAATATTCCAGGTTTAGTGTCCCACCAATTCATCCCTGCAGTGCAAATGTCAATGAATCCACCATCCTCTCATGTTGGTTTAAGACCAAATGTTATTCAACCATTGATGCAACCTCTGCAAAATCATATGGACCAATATAATGATCATGAAAGTACATCAGGTCCAAGGATCATCCAGCTTCCTGCTGATCACAACTACAATACATACCATGTTCAAGTTCCTTCTGTTGTGGTTGCAGGTAATTATGGTTGGGTTCAGGTTCCTCCACAAGAGCATGCTATTTTCTCCGATGGGTTTTTATCTCAACAACAGGTAAAGATCCCTGAGAAAATCCAAAGAGTGGAAGATTGTTATATGTGTCAGAAGTCGTTGCCTCATGCACATTCAGATCCAGTGGTCCAGGATCAGCAGGATAGTGGTGCGGCTTCAATTTCTGATTCAGTCCCAAGTTATAATAGTCTCCCTATGGAGGAAAACTTAACAGCTCAAGCAACAAATAGGATTATGGTGACTGCACCCTTGAAGGAAGGTGTTATAGAACAAGGGGTTGGGACTAGATCCAGGGTCATTAGTAAAGGGGAAACTCCAGTTGGAGTACCTTGCTCTAATACAACTGGGCTTTCTCTTAAACTTGATCATCCTGAAGGTGAGAGGAATTTTATACAAAAGCATGATGGTTTTGATCATCCTAAGAATTCAGTTATCCAGGATGTGATTGGAAGGGCAGGTGATAACCAGTCGCCAACTGATGGGCTCATGGGGACAGCACCACTGTCTTGCCTAGATGATGTGGTCCGCCAACGTGTGGTGCAAGTTGAAAACTGGGTTAAACAGGATGTGCTAGTGAATAAACCTGTTAATAGTGATATACCTTCAATTGGTGGAACAGCCATACAAAGTCCAGAGTCCATTGTTCAAGAATCCCCAAAAGAGTATAATAATGAACTTGTTGGCATCATTTCAAAGGCAGATGGTGTAGATAATTGGGTTACACATAACCATCTGAGACCAATTGATGGGAGGATGGACACTATTAGGATATGCAATCCTGAAATTTATGTAAATAATAATCAGCAAGTTGTAGAGAAAGAAGTGATTCTGGACAACAATTTTGGCATATCAAAAATGGTCTTTGATGCAAATCCAATTGAGATGACTGATGCACTGCCTTGTTCTTCCTCAGAAGTTTCATATGGGCATAATTCAAGGCCAGTGGAATGTAATCAGATAGCACAAACACCTGTTTGGGACATTCCTGGTTCAAATCCTCAGCCAAAGAGTGGAAACCTTCACAAGGATGATAATCCGCCATCTTTGATATCTCCATCTGTCAGGTCTGGAGATGTTCAGGATTCTTCAAACTCACTTTTCAGCAATCAGGATCCCTGGAATGTACAGCATAGTACCTACTTTCCACCTCCAAGACCAAACAAAGTTCCATTGAAGAAAGAAACCTATTCTTCTAAGGATCACTTTGGTGAGGATGTGACGGGCAACACTGGGGAATTAAAATTAGAAGCTCAATTGGAGGATAGTCTTTACCATCCATTCAAACAGAATTTAACTTTAGAACATGGCTCCGCTGAAGACCAGATCAAACAAGAACTTCAAGCTGTTGCTGAAGGTGTAGCTGCTTCTGTTCTTCACTCTAGCACCCCTTATAATCCTGACTTGCATGCTAAAGATGTGTCCAGTCGTTCAAACATTGGGGATGTAGATGTTCCAAGTAATCAGATAGATACACAATGTAGAGCTAAAGTTCCGGATGTCAAGAGCAAGTCACCAGAAAAGGCAAATTTTGGCTTTCCTGTATCAGATGGCCTAGGAGGATTGCAGATTATAAAGAATTGTGACCTTGAAGAGCTGAGAGAATTAGGGTCGGGTACCTTTGGGACTGTATATCATGGAAAATGGAGGGGCACTGATGTTGCAATCAAGCGTATTAATGATAGGTGTTTTGCTGGAAAGCCTTCTGAGCAAGAGCGCATGAGAGCTGACTTCTGGAATGAGGCAATCAAGCTCGCTGACTTGCACCATCCAAATGTTGTAGCATTCTATGGTGTTGTGCTTGATGGCCCAGGAGGTTCTGTGGCAACAGTAACAGAGTATATGGTTAATGGTTCTCTTAGAAATTCCTTGCAGAAAAGTGAGAGGAATCTTGACAAGCGCAAGCGTCTTTTGATTGCAATGGATGTGGCATTTGGTATGGAATACCTGCATGGAAAAAATATAGTACACTTTGATTTGAAAAGTGACAACTTGCTTGTAAATCTCCGAGATCCACACCGCCCAATATGCAAGTGTACCCTGAAGAAGCAATGGGGTTTGGTTCACTTTAAGTTACTAATATTGAAAGTGACCCAATCTAGAGGTTCATATCAGGATTTAAATCATGATGTAGGTGACTTGGGTCTATCCAAAGTGAAATGTCAGACATTGATTTCTGGGGGTGTGCGAGGAACACTGCCTTGGATGGCCCCAGAACTGTTGAATGGAAGCAGTAGCCTTGTTTCAGAGAAGGTTGATGTGTTTTCATTTGGTATTGTTATGTGGGAAATCCTCACTGGAGAGGAGCCATATGCTGATTTGCACTATGGTGCTATTATAGGTGGTATTGTGAGCAACACTTTGCGGCCTTCAGTTCCAGAATCTTGTGATCCGGAATGGAGATCGCTGATGGAGAGGTGCTGGTCAGCAGAGCCATCAGAGAGACCAAGCTTTACTGATATTGCAAATGAACTGCGCTCCATGGCAACCAAGATTCCTCCCAAAGGACAAGGTCAACAGCAGCAACCGGCGTCATTGCAGCCTCAAGGACAGAAATGA 4398 0.4379 MAFDQNPIPKDLRPLNVARTIAEEPLIGLPTTTGRTAEGFPPTSVREVGSPGAVPLFYPAPVSDAGFVGVGYGNMSSSTATWCVRPAVPIRQPTMNPAAGFNYSPKFGNRTGGGNAVDLLSSLVANGPGYAPILGNWVGANNLDKAGDDAANGFDCSSVQGYRVTGNAIASDPVGSIAATGIAYSPTIGQRQVGNGAHQASEEGGDDSLSGRKVKFLCSYGGKILPRPSDGMLRYVGGQTRIISVKRSVSFNELMQKMVDTYGQPVVIKYQLPDEDLDALVSVSCPDDLENMMDEYEKLIERSSDGSAKLRIFLFSASELDTSGVMQLGDLHDSGQKYVDAVNGATVGISCGILRKESITSATSTQNSDFSGIEALDSSTAGPGDISEAPSSCMLSPKENLAASHDIGTKLMVPDHIPIVYSDASANPVGIPVTKFGPTHTLPFQNEVEVERSVPATLPQQQFGLQKSGMDIPSHAPYSQPFVDPRQEVLNHADYFQLPPQTGFPNSQLLGKPGSIFTQQQFHGNIPGLVSHQFIPAVQMSMNPPSSHVGLRPNVIQPLMQPLQNHMDQYNDHESTSGPRIIQLPADHNYNTYHVQVPSVVVAGNYGWVQVPPQEHAIFSDGFLSQQQVKIPEKIQRVEDCYMCQKSLPHAHSDPVVQDQQDSGAASISDSVPSYNSLPMEENLTAQATNRIMVTAPLKEGVIEQGVGTRSRVISKGETPVGVPCSNTTGLSLKLDHPEGERNFIQKHDGFDHPKNSVIQDVIGRAGDNQSPTDGLMGTAPLSCLDDVVRQRVVQVENWVKQDVLVNKPVNSDIPSIGGTAIQSPESIVQESPKEYNNELVGIISKADGVDNWVTHNHLRPIDGRMDTIRICNPEIYVNNNQQVVEKEVILDNNFGISKMVFDANPIEMTDALPCSSSEVSYGHNSRPVECNQIAQTPVWDIPGSNPQPKSGNLHKDDNPPSLISPSVRSGDVQDSSNSLFSNQDPWNVQHSTYFPPPRPNKVPLKKETYSSKDHFGEDVTGNTGELKLEAQLEDSLYHPFKQNLTLEHGSAEDQIKQELQAVAEGVAASVLHSSTPYNPDLHAKDVSSRSNIGDVDVPSNQIDTQCRAKVPDVKSKSPEKANFGFPVSDGLGGLQIIKNCDLEELRELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQERMRADFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNSLQKSERNLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKCTLKKQWGLVHFKLLILKVTQSRGSYQDLNHDVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWEILTGEEPYADLHYGAIIGGIVSNTLRPSVPESCDPEWRSLMERCWSAEPSERPSFTDIANELRSMATKIPPKGQGQQQQPASLQPQGQK 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1227 1465 CDD PB1_UP2 217 315 - -
Glsi02g1227 1465 ProSiteProfiles Protein kinase domain profile. 1143 1442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1227 1465 SMART PB1_new 228 317 IPR000270 GO:0005515
Glsi02g1227 1465 ProSitePatterns Protein kinases ATP-binding region signature. 1149 1180 IPR017441 GO:0005524
Glsi02g1227 1465 CDD STKc_MAP3K-like 1149 1438 - -
Glsi02g1227 1465 MobiDBLite consensus disorder prediction 1446 1465 - -
Glsi02g1227 1465 PRINTS Tyrosine kinase catalytic domain signature 1365 1387 IPR001245 GO:0004672|GO:0006468
Glsi02g1227 1465 PRINTS Tyrosine kinase catalytic domain signature 1409 1431 IPR001245 GO:0004672|GO:0006468
Glsi02g1227 1465 PRINTS Tyrosine kinase catalytic domain signature 1225 1238 IPR001245 GO:0004672|GO:0006468
Glsi02g1227 1465 SUPERFAMILY Protein kinase-like (PK-like) 1138 1437 IPR011009 -
Glsi02g1227 1465 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1136 1230 - -
Glsi02g1227 1465 SMART serkin_6 1143 1441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1227 1465 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 233 317 - -
Glsi02g1227 1465 Pfam Protein tyrosine and serine/threonine kinase 1144 1438 IPR001245 GO:0004672|GO:0006468
Glsi02g1227 1465 MobiDBLite consensus disorder prediction 652 676 - -
Glsi02g1227 1465 Pfam PB1 domain 233 316 IPR000270 GO:0005515
Glsi02g1227 1465 Gene3D - 234 317 - -
Glsi02g1227 1465 PANTHER SERINE-THREONINE PROTEIN KINASE 255 1441 - -
Glsi02g1227 1465 Gene3D Transferase(Phosphotransferase) domain 1 1231 1464 - -
Glsi02g1227 1465 MobiDBLite consensus disorder prediction 654 676 - -
Glsi02g1227 1465 MobiDBLite consensus disorder prediction 938 1003 - -
Glsi02g1227 1465 SUPERFAMILY CAD & PB1 domains 229 321 - -
Glsi02g1227 1465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1268 1280 IPR008271 GO:0004672|GO:0006468
Glsi02g1227 1465 MobiDBLite consensus disorder prediction 938 995 - -
Glsi02g1227 1465 Gene3D Phosphorylase Kinase; domain 1 1136 1230 - -
Glsi02g1227 1465 MobiDBLite consensus disorder prediction 1438 1465 - -
Glsi02g1227 1465 MobiDBLite consensus disorder prediction 364 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1227 Glsi-ChrGlsi02 8684636 8693362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1227 169 662 MAP Kinase Kinase Kinase AT3G46920 41.040 5.57e-97 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Glsi02g1227 PK_Tyr_Ser-Thr 4.1e-55 CL0016