Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1224 ATGGCTGGCATGCTTCCTGGAGTTGAATCTGCTCGAAGGAGACGGTTCCATCAGAGCGGGGGATGGTCAGATTCCACAGCCATGGCTGCCCCTAATTCGACTAGGCGATCTTCTTTCTGTTTGTATTCTAGCAAACATGAATCCCTTCTTTCCTCTTCCTCTTCACTGCAAAGAAGTATGTTATACCAGGCACGCCCAGATGAGAAGCTGGGAGGAGCAGCCAGAGAAGCCAAAGAAAGATTGGATGAGAGATTTAGAGCACAGAAGAAATCACATAACAAAAGGCAAAACTGCAAAGAGAAATTGAACACGGAAGGCAGATCCACAGCTTTGTCAGAGTTGCACATAGAGGTATATGGGGCAAAGAAAAGTGGGTCAAGGATGTTCAACTGGACCAAACTGAGCTGGAAGGCCTCAGAGCAAGACGATTGCGCGGTGTGCCTGGAGTCGTTCAAAGTTGGGGAGACACTGATCCACCTACCCTGTGCCCATAGGTTCCATTCCAAATGCTTGGAGCCATGGCTACAAAATAATCCTCACTGCCCATCTTGCAGAATGTCCATTTTCTCTCCTTAA 576 0.4792 MAGMLPGVESARRRRFHQSGGWSDSTAMAAPNSTRRSSFCLYSSKHESLLSSSSSLQRSMLYQARPDEKLGGAAREAKERLDERFRAQKKSHNKRQNCKEKLNTEGRSTALSELHIEVYGAKKSGSRMFNWTKLSWKASEQDDCAVCLESFKVGETLIHLPCAHRFHSKCLEPWLQNNPHCPSCRMSIFSP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1224 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 190 IPR013083 -
Glsi02g1224 191 SMART ring_2 144 184 IPR001841 -
Glsi02g1224 191 PANTHER SI:CH211-59O9.10 11 189 - -
Glsi02g1224 191 FunFam Zinc finger family protein 118 190 - -
Glsi02g1224 191 MobiDBLite consensus disorder prediction 85 104 - -
Glsi02g1224 191 SUPERFAMILY RING/U-box 129 190 - -
Glsi02g1224 191 Pfam Ring finger domain 142 185 IPR001841 -
Glsi02g1224 191 MobiDBLite consensus disorder prediction 1 30 - -
Glsi02g1224 191 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Glsi02g1224 191 CDD RING-H2_PA-TM-RING 143 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1224 Glsi-ChrGlsi02 8661243 8662044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1224 1 86 C3H Transcription Factor Family AT2G15580 49.474 5.46e-18 73.9