Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1222 ATGGGTGCCACCAATAGTCGACCCGTTTCTCGCACGTCTGCTCCCGGAGTCAACGACGCCAACCGCTTCAGACTATCCTCTCTTCTCTGCGGTACCTCCACCTCCCACTCTAATTATGAGATTGAAGATCATCCAACTGAACTTCTGGTAGATTCTTCTGCTACAGACTTTGGCGATGAAGTTCAGAAAGTCCGTGAGGAATCGTCTTTATCATGTTGTACAGAAGCTAGAATTAGCAGCTCTCATGCTGAAACTGCAACTTCATTTGATAGCAGAATTGAATCCAGTGGGAATGCTACTCTTGAAGGTTCTTCCAGAAATGTTGCAACTAGTGATCAGAGGAAGGGCTTGTTTCAATGTAGGGAGTTAGTTCTTCCTCATGAGGTAAGCGCTGATTATAGTCATGATGAATCTTATAGGGACAATAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGGTCCACTCTCTGTAAATGTTTCTGCTAACAAGGATGCAATCAATAACATTGATAATTCAGTGGATAGTAGGATCTCTCAAATCTCTGGTGAGACATTGCATCCATGGAGCTCATCCCCTCAAGGGTATGGAGATTCCAGTTCTGATGAAATTTCTGCTGAGAGTCATACTAGTGCAATTACTGCTATCCAGAATTCTGATTCCAATTCTGGTTCTCAAGTTTCCGATTTACCAGCCACTTCTCAGTTGCCAGAAAATGAATCTCATGAAGATACAATTCCTTCAGGTTTAGGTTTTCTTGTGTCCAACTGGGAAAGAAGACATGGAAATGAAAGTGTGCTTCATGTTGATGTGATTACAATATCTTCCAACAATTTGTCTCCTAGTAATGCTGATGTCAGTGATCAGGATGCCAGAGGGAATGGTGGAAGACTATTTTGGGATGCTTTTTCACCTCGTAGTTCTAGAAGGCTTGGTGTTTCTCCAACTATTGTCTTCTCAGCTGGTGATGATCCAGTATCTCAAGATCAATGGATTCTTGATTTGAGTAGTGATTTCTCAAATGATGAGGTTGGAGAGGATTCTCAATACCTCGGCAGTAGAATCCACAGATTGCATGAACGGATGCCACACTCAAGATCTGAGATCTGGGGAAGACTACGTGGTGGCCTTAATGAGATTGGACCGTGGAATACATCTTGTCCATTAGGACTCCACCCTGACGGCATGTGTTCATGTGAATCTTTCTCGATAGCTGAGGAATCCAGCACTCAAGCAAGTATATCAAGAATAGTCATGCTTGCAGAAGCTTTGTTTGAGGTTTTAGATGACATTCATCACCAACCTCTGTTGTCTTCCTTATCCATGGTCTCTCTTCCAGCGCCAGTATCAATTGTTGACTCTTTCCCTTTGAAGTGTCACAAAAAGGTTGACTCAGCTGATGGTGGCAGTGCCAGTGATTCTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAAGGGGACAAAATACGAGTTCTTCCTTGCAACCATGAGTATCACATGTGCTGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTTTGTCGTGGGAATGTTTGTGGAGGGTTCACCGAGTCTTCTGCCCCTTAA 1608 0.4322 MGATNSRPVSRTSAPGVNDANRFRLSSLLCGTSTSHSNYEIEDHPTELLVDSSATDFGDEVQKVREESSLSCCTEARISSSHAETATSFDSRIESSGNATLEGSSRNVATSDQRKGLFQCRELVLPHEVSADYSHDESYRDNSNTASTSFVEQQSSGPLSVNVSANKDAINNIDNSVDSRISQISGETLHPWSSSPQGYGDSSSDEISAESHTSAITAIQNSDSNSGSQVSDLPATSQLPENESHEDTIPSGLGFLVSNWERRHGNESVLHVDVITISSNNLSPSNADVSDQDARGNGGRLFWDAFSPRSSRRLGVSPTIVFSAGDDPVSQDQWILDLSSDFSNDEVGEDSQYLGSRIHRLHERMPHSRSEIWGRLRGGLNEIGPWNTSCPLGLHPDGMCSCESFSIAEESSTQASISRIVMLAEALFEVLDDIHHQPLLSSLSMVSLPAPVSIVDSFPLKCHKKVDSADGGSASDSEQCYICLAEYEEGDKIRVLPCNHEYHMCCVDKWLKEIHGVCPLCRGNVCGGFTESSAP 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1222 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 457 527 IPR013083 -
Glsi02g1222 535 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 534 - -
Glsi02g1222 535 MobiDBLite consensus disorder prediction 132 162 - -
Glsi02g1222 535 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Glsi02g1222 535 SMART ring_2 480 521 IPR001841 -
Glsi02g1222 535 MobiDBLite consensus disorder prediction 83 112 - -
Glsi02g1222 535 MobiDBLite consensus disorder prediction 140 162 - -
Glsi02g1222 535 SUPERFAMILY RING/U-box 479 525 - -
Glsi02g1222 535 Pfam Ring finger domain 479 522 IPR001841 -
Glsi02g1222 535 FunFam Putative RING zinc finger domain superfamily protein 445 527 - -
Glsi02g1222 535 MobiDBLite consensus disorder prediction 187 245 - -
Glsi02g1222 535 MobiDBLite consensus disorder prediction 187 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1222 Glsi-ChrGlsi02 8650048 8654260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1222 387 526 C3H Transcription Factor Family AT5G45290 50.323 2.24e-39 149