Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1219 ATGTGTGTGCAGGACGCGGAGCAAGTTGGCCAAGATATGGAGGACCTGGAGAACAGAAGGAAGTCATGGCCTTTGCATTGTGATTTCTTGCATACCCAGATGGAGAACTGGGAAAAGGAATCATCTTTAACAACTTCTAGTCATCGGATCAGTGTTGGAAATTCATTTCCTCTGGAAAGCATAGGTGAGGATGCAGTAATTGCAGACAGAAAACAGACCCTGCTGGACTTTGTCCCTGCTATTCGTTCTGGTGAGTGGTCAGATATTGGAGGTCGCCCATATATGGAGGATGCCTACATATGCATTGGAGACTTAGGAAAGAATTTTGGGTATAATGTACTCAGTGATGAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCCGCACAATTTGTCCGTGATTATCTGCCAAGAGTGATTGTTGAGCATGCTGACTTTCCTTTGGAGCTTGAGAAGGTAATCACAAGGTCATTTTTGGAGACGGATGCTGCATTTGCAAAGACATGCTCTCTTGAGTCTTCCCTGTCTTCTGGTACAACTGCACTAACTGCAATTATATATGGCAGGTCTTTGCTTGTAGCCAATGCTGGAGACTGCAGGGCTGTGTTGTCCAGATGTGGAAGGGCTATAGAAATGTCCAAAGATCATAGGCCTTTCTGTGACAAAGAAAGGATGAGGATTGAATCCTTGGATGGATTCATTTATGATGGTTACCTGAATGGCCAACTAGGCGTCACTCGTGCTCTAGGTGACTGGCATCTTGAAGGAATGAAGGAAATGAGTGAGAGAGGAGGGCCCCTGAGTGCTAAGCCAGAACTTAAACTGATGACATTAACCAAAGAAGATGAGTTCTTAATAATTGGGAGTGATGGAATCTGGGATGTGTTCACTAGCCAGAATGCTGTAGATTTTGCTCGGAGGAGGCTTCAAAAGCATAATGATGTGAAATTGTGCTGCAAAGAAATAGTGGAGGAAGCAATAAAGAGAGGATCAACAGACAATTTGACAGTTGTAGTGGTCTGTTTTCACTCAGATCCTCCACCACCAGTGGTGGTAGAAAGGGCAAGAGTCAGGAGAAGCATTTCTGCTGAAGGACTTCAGAATCTTAAATGCCTGTTAGAAGGATAG 1143 0.4427 MCVQDAEQVGQDMEDLENRRKSWPLHCDFLHTQMENWEKESSLTTSSHRISVGNSFPLESIGEDAVIADRKQTLLDFVPAIRSGEWSDIGGRPYMEDAYICIGDLGKNFGYNVLSDEAVSFYGVFDGHGGKSAAQFVRDYLPRVIVEHADFPLELEKVITRSFLETDAAFAKTCSLESSLSSGTTALTAIIYGRSLLVANAGDCRAVLSRCGRAIEMSKDHRPFCDKERMRIESLDGFIYDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAKPELKLMTLTKEDEFLIIGSDGIWDVFTSQNAVDFARRRLQKHNDVKLCCKEIVEEAIKRGSTDNLTVVVVCFHSDPPPPVVVERARVRRSISAEGLQNLKCLLEG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1219 380 SMART PP2C_4 72 345 IPR001932 -
Glsi02g1219 380 Coils Coil 371 380 - -
Glsi02g1219 380 FunFam Probable protein phosphatase 2C 22 66 350 - -
Glsi02g1219 380 SUPERFAMILY PP2C-like 73 348 IPR036457 -
Glsi02g1219 380 Gene3D - 69 350 IPR036457 -
Glsi02g1219 380 Pfam Protein phosphatase 2C 94 339 IPR001932 -
Glsi02g1219 380 PANTHER PROTEIN PHOSPHATASE 2C 53 345 IPR015655 GO:0004722|GO:0006470
Glsi02g1219 380 CDD PP2Cc 81 347 IPR001932 -
Glsi02g1219 380 ProSiteProfiles PPM-type phosphatase domain profile. 82 347 IPR001932 -
Glsi02g1219 380 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1219 Glsi-ChrGlsi02 8637811 8642006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1219 35 380 PP2C-type Phosphatase Gene Family AT2G25620 56.374 6.74e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Glsi02g1219 PP2C 1.8e-65 CL0238