Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1218 ATGGAAAGGAGCCTATCTGAATTTTTTAATGGTTTCCGGGTTCGCGGTACGTTATTCTCAACTCAGCAACCTTGCTCCACAGCTCAATCGAAGAGCTCCGCAACCATGGCTGAGCAAACTGAGAAGGCTTTTCTAAAGCAACCTAAGGTGTTTCTATGCTCAAAGAAATCTGGGAAGGGAAAGAGGCCCGGAAAGGGTGGCAATCGCTTTTGGAAGTCTATTGGGCTTGGCTTCAAGACTCCCCGGGAGGCCATTGAAGGAACCTACATTGATAAGAAGTGCCCCTTCACTGGCACTGTTTCTATCCGGGGTCGTATATTGGCTGGTACTTGTCATAGTGCTAAGATGACAAGGACTATTATTGTCAGAAGGAATTATCTTCATTTTGTCAAGAAGTACCAGAGATATGAGAAGAGGCACTCAAACATTCCTGCTCATATATCACCTTGCTTTCGTGTAAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGACCAATCTCAAAGACAGTGAGGTTCAACGTGTTGAAAGTGGTCCCAGCTGGATCTTCTGGTGGTGTGAAGAAGGCATTTACTGGAATGTGA 585 0.4513 MERSLSEFFNGFRVRGTLFSTQQPCSTAQSKSSATMAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVVPAGSSGGVKKAFTGM 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1218 194 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 45 184 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1218 194 FunFam 40S ribosomal protein S11 36 193 - -
Glsi02g1218 194 Gene3D - 23 193 - -
Glsi02g1218 194 NCBIfam 30S ribosomal protein S17 89 178 IPR028333 -
Glsi02g1218 194 Pfam Ribosomal protein S17 109 177 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1218 194 ProSitePatterns Ribosomal protein S17 signature. 156 168 IPR019979 GO:0003735|GO:0005840|GO:0006412
Glsi02g1218 194 PRINTS Ribosomal protein S17 family signature 123 146 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1218 194 PRINTS Ribosomal protein S17 family signature 156 166 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1218 194 PRINTS Ribosomal protein S17 family signature 166 173 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1218 194 Pfam Ribosomal_S17 N-terminal 39 107 IPR032440 -
Glsi02g1218 194 SUPERFAMILY Nucleic acid-binding proteins 103 182 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1218 Glsi-ChrGlsi02 8628394 8630782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1218 36 194 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 90.566 1.46e-97 278