Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1215 ATGGGAAGTAATGGCACTGAGAAGATCCTTAACAACAACCTCAGTGAAGTTTCAGAAACCACCATTGGCATAAAGATAAAAACACTAGATTCACAAACTTATACTCTCAGAGTGGATAAACAGATGCCAGTACCTGCTCTGAAAGAACATATTGCTTCTGTAACTGGAGTCTTATCAGAGCAACAACGCTTAATTTGCCAAGGAAAAGTTTTAAAGGATGATGAACTGCTCTCTGCCTACCTAGATGTTGAAGATGGTCACACCTTACATCTGGTTGTCAGGCATCCAGATCAACCATCACCTGGGAGTTTGCCCAATCATTCAGGTTTAGTGCAGATTATTTCTGCTGTTCTAGGATCTATTGGAATTTCAAATTTTGTTGGTGGCAGTGAAGGGCTTTATGTCAGGGAGCATGACCCCCAAGGGTTTGGAAGAACATCAGGTTCTAATGCCATATCAGATTCCTTTCATCCTCAACCCGAGCAAGCTGGTGTGCAGAATTTATCTGATAGATTGTATAATTCCTTTGGTCTTCCAACAGCAATTTCTTTGGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTATCCTTGTACCTGAGTAATATAAGGCGTGAATTTGATGCCATTGTCAGAGAAGGGGGAGATATTGTCCAAGCATTTGAGGCTCGCAGGAATGAAGAAATAGGATCCATTTCTTCTCCACGTGTAGGTTCTACACCAGAAGGGTTGTCATCACCTGCATCCTTGGCAGAAGTCTTACTTTCTACCAGACAAATGTTAAATGAACAACAACTGGCAAGACAGCTGGAGAATCAAGCAGATGTGACTGATCACTTATTGCGGTCAAATGCTCAGTCTAGGGCTTGGAGAACTGGAGTTCAATTTTATAACCTTGGTGCAACTTTACTTGAGTTAGGTCGTACAACCATGACATTGCGATTGGGTCAAACACCGTCTGAAGCTGTTGTTAATGGTGGGCCTGCAGTTTATATATCCCCTTCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGTAAGCTTTGGTGCTGTCCCTGTGGGTGTTGCATATCCTAGCTCTGGTTCAGATAGTGGACTTGGCTCAAGTTTTTTCCCAAGGAATATTGATATACAGATACAACGAGGTACATCAACAACCACAACCATTGTCAATCAAGAAGAACATGATGATAACCAGTCTGCCACAGTACCAGGAAATCCTGGTGAAATTTATGCTAATCAAGCAACCTCAAGATTTCCAGAGGATTCATCTTTTGCTAGGGAGTCAGGAGTACGGATTTTACCAATTAGAACCATGATTGCGGCAATACCTAGTCCCTTAGGCCGCCCACCTTCAGAAACTTCTGGATCCTCACCAAATCCCAGCATAAGACAGGAGCCTTCTGCTAGACACAGTGTGAATATTAATATTCTGACAGCTGGTGGGGTCCAAAACATCCAAGAATCCGAAAGACAGATGCCCAGCACTGTAGTTCAGTTTATAAGGTCACTCTTTCCTGGTGATGAAGTTCAGGTTGACGATTTCAGTTTACAGGGAACAACTATTGGGTCTACCTCAGTGGATGCTGAAACTTTTAGGGGTGCTGCACATTTCCCTGAAGCAGAAGCCAGAGTTAGTGATGAAGGTTTATTTTTGTCTAATCTACTCTGCGAGGTCATGCCCCTCATATCTCAAGGAGCAGGATCGAGGACTCCCATAGCCCCTGAAAGGGAATCAGAGGATCAAATGGCTGAAGATTCTTCGAACCAGGTGGGGACATCATGCAGACAGAGTGGTTCTGAACCAAGTCCTCCTAATCCAAAACGTCAAAAGTTCAAGCATGATCTTTCTTCCTCCAGCTATGTTCTTCTTGGATTGTTACATCATGCTGAACTCACTGGGCAATGGAATTTAGCTTTTTTGAAAGAACTATGTGGTTTTCCCTTGAAGCAGTTACTGGGGGGTCCTTGGGCATCATGTGATTAG 2010 0.4343 MGSNGTEKILNNNLSEVSETTIGIKIKTLDSQTYTLRVDKQMPVPALKEHIASVTGVLSEQQRLICQGKVLKDDELLSAYLDVEDGHTLHLVVRHPDQPSPGSLPNHSGLVQIISAVLGSIGISNFVGGSEGLYVREHDPQGFGRTSGSNAISDSFHPQPEQAGVQNLSDRLYNSFGLPTAISLGSLQPPVIPDSLTTLSLYLSNIRREFDAIVREGGDIVQAFEARRNEEIGSISSPRVGSTPEGLSSPASLAEVLLSTRQMLNEQQLARQLENQADVTDHLLRSNAQSRAWRTGVQFYNLGATLLELGRTTMTLRLGQTPSEAVVNGGPAVYISPSGPNHIMVQPLPFQPGVSFGAVPVGVAYPSSGSDSGLGSSFFPRNIDIQIQRGTSTTTTIVNQEEHDDNQSATVPGNPGEIYANQATSRFPEDSSFARESGVRILPIRTMIAAIPSPLGRPPSETSGSSPNPSIRQEPSARHSVNINILTAGGVQNIQESERQMPSTVVQFIRSLFPGDEVQVDDFSLQGTTIGSTSVDAETFRGAAHFPEAEARVSDEGLFLSNLLCEVMPLISQGAGSRTPIAPERESEDQMAEDSSNQVGTSCRQSGSEPSPPNPKRQKFKHDLSSSSYVLLGLLHHAELTGQWNLAFLKELCGFPLKQLLGGPWASCD 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1215 669 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Glsi02g1215 669 ProSiteProfiles Ubiquitin domain profile. 22 98 IPR000626 GO:0005515
Glsi02g1215 669 MobiDBLite consensus disorder prediction 575 620 - -
Glsi02g1215 669 MobiDBLite consensus disorder prediction 451 477 - -
Glsi02g1215 669 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 464 616 - -
Glsi02g1215 669 SUPERFAMILY Ubiquitin-like 17 107 IPR029071 -
Glsi02g1215 669 Gene3D - 15 106 - -
Glsi02g1215 669 FunFam Large proline-rich protein BAG6 14 108 - -
Glsi02g1215 669 SMART ubq_7 22 94 IPR000626 GO:0005515
Glsi02g1215 669 MobiDBLite consensus disorder prediction 593 613 - -
Glsi02g1215 669 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1215 Glsi-ChrGlsi02 8605480 8613942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1215 24 94 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.437 2.55e-07 48.5