Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1201 ATGAAAGATAAGATCAAAAGCAACACTAAAATAAAACAGAGAGGGAAAGGGCAGGCTACCATTGCGACAAACCTCTCCCGTCTAGTATTGCGATATTCGATAACCCTCTCCCAACAAGCAGCAGCAACAGTTCTTGAGAAACCGGAGGCAGCAATGCTAGAGATTTTATTAAGGGGGTGGTTTTCGCAGTGGCTAGTGTGCATCCTCCTCCGTTTTTCAACTTTGCCTCCGTATCTGCTTCTGAGAGTTGCAACCATGGCCGAACAAACTGAGAAGGCTTTTCTTAAGCAACCGAAGGTGTTTCTGAGCTCAAAGAAATCTGGGAAGGGAAAGAGGCCTGGAAAAGGCGGAAATCGCTTTTGGAAGTCCGTTGGTCTTGGATTCAAGACTCCTAGGGACGCCATTGAAGGAACCTACATTGATAAGAAATGCCCCTTCACTGGCAATGTCTCTATCCGAGGTCGTATCTTGGCTGGCACTTGTCATAGTGCTAAGATGACAAGGACTATTATTGTTAGAAGGAATTATCTTCACTTTGTCAAGAAGTACCAGAGATACGAAAAGAGGCATTCAAACATTCCTGCTCATGTATCACCTTGCTTTCGTGTGAAGGAAGGAGATCATGTCATTATTGGCCAGTGCAGGCCAATCTCAAAGACAGTTCGGTTCAACGTGTTGAAAGTTATCCCAGCTGGATCTTCTAGTGGTGTGAAGAAGGCATTCACTGGAATATGA 735 0.449 MKDKIKSNTKIKQRGKGQATIATNLSRLVLRYSITLSQQAAATVLEKPEAAMLEILLRGWFSQWLVCILLRFSTLPPYLLLRVATMAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSSGVKKAFTGI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1201 244 FunFam 40S ribosomal protein S11 86 243 - -
Glsi02g1201 244 NCBIfam 30S ribosomal protein S17 140 228 IPR028333 -
Glsi02g1201 244 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 95 235 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1201 244 Pfam Ribosomal_S17 N-terminal 89 157 IPR032440 -
Glsi02g1201 244 SUPERFAMILY Nucleic acid-binding proteins 153 232 IPR012340 -
Glsi02g1201 244 Gene3D - 74 243 - -
Glsi02g1201 244 ProSitePatterns Ribosomal protein S17 signature. 206 218 IPR019979 GO:0003735|GO:0005840|GO:0006412
Glsi02g1201 244 PRINTS Ribosomal protein S17 family signature 216 223 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1201 244 PRINTS Ribosomal protein S17 family signature 206 216 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1201 244 PRINTS Ribosomal protein S17 family signature 173 196 IPR000266 GO:0003735|GO:0005840|GO:0006412
Glsi02g1201 244 Pfam Ribosomal protein S17 159 227 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1201 Glsi-ChrGlsi02 8470446 8473034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1201 86 244 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 90.566 2.12e-97 280