Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1199 ATGGGGAAGAAAAAGGAACAAGTAGGAGAAAAACCAAGTGAAGATGGTGGCAGTCAAAGCAAAGTTGGAGATAGTAGCCCCAAAGCATATGACAAGGATACTATGGTATTTATATCCATGTCTCAGGAGTTAAAGGATGAGGGGAACAAGCTGTTCCAAAAGAGGGACCTTGAAGGAGCTATGCTAAAATATGAGAAAGCTCTCAAGTTGCTTCCAAGAAATCATATTGATGTGTCCTATCTGCGGAGTAATATGGCAGCATGCTACATGCAGATGGGACTTGGTGAGTACCCTAGGGCAATTCATGAATGCAATTTAGCCCTTGAAGTTACACCGAAATACTGTAAAGCGCTGTTGAAGAGGGCAAGGTGCTATGAAGGTTTAAATAGGCTGGATTTAGCTCTGAGAGATGTTAGTACCGTATTGAAGATGGAGCCAAAGAATATCATGGCATCAGAGATTTCAGAAAGGGTGAAAAAAGCACTTGAGGAGAAAGGATTAAGAGTAAATGATACAGTAATTGAGTTGCCTCCAGATTATGTTGAACCTTCTTATGCTTTGCCTCCAGAAAAAGTAGTGAAAGGGAAGACACACAAGAAGAAGAGCAACAAAGTTGAGGTGAAGGCCGCTGATGACAAAATTGTAGAAAAGCAAGCTGAGGAGAAATTGGAAGAGAAGAGGGTTGAGAACAACATTGAGGAGAAGGCTGGGAAGAAATGCAAAAAGAAGAAGGCCAAGGAAAAGATTGATGAGAAGAAGGATGATGTTAAGGAGGTTGTGGAGGAAAAAATTAATGGTAGAAGGGAACATATGACAAAGAAAACAGCAAAACTTGTTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGCAGCCTCCTGCAGCTAAGAGAAGTTATCTGCGAGCGATTCCCAAGCCTAGGATCAGTTCTTGTCAAGTACAGGGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGCAGAATTAAGATGGGCTGAAACATCAGCAGGATCACAGGGTTCAATCCGGCTGTACATAGTAGAAGCTAATCCTGAGCAGGATCCATTCTTTGAGAAACTTAATAAAAAGGAGGCACAAACGCTTGGCATTAATAAAGCACCTGAGAATGGTTGTGTGGTAAAAGAAAAGGAAATGATTACCTCATCTTGCATTGAGGATTGGGTAATCCGGTTTGCTCAGCTGTTCAAGAACCATGTTGGATTTGAATCTGACAGATATTTGAATTTTCACGAGCTTGGTATGAAGGTCTACTCTGAGGCTATGGAGGAGACAGTTACGAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAACTGGGGAAACGTTCACATGTCCAGGGCAAGGAAGAAAGTGTATTTCACGGAAGATTCTTCAAAAGAGCATCTGTATGAACAAATCAAAAGTGCATATGACTGGGCACAGAAAGAATACGCAAAAGCAGGAGAAAAATATGAAGCAGCCATTAAAATGAAATCAGATTTTTATGAAGGCTTCCTGGCACTAGGGCAACAACAATTTGAGCAAGCAAAACTTTCTTGGTATTATGCAATCAGCAGTGGTGCTGATTTAGCAACATGGCCCTCTGCTGAGGTTCTTCAGCATTACAACAATGCAGAGGACAATATGGAAAAAGGAATGCAGATATGGGAAGAATCAGAAGAGCAGTGCTTGATTAAAGCCTCCAAATCAAAGGATGTCAATTTGAATCTACATAACATGGGATTGGATGAGCTATTTAAAAATATATCATCAGATGAAATTGCTGCACAGACTGCAAATATGAGGTCTCAGATAAATCTACTGTGGGGCACCATGCTATATGAGCGTTCAATTGTGGAATTCAAATTAGGATTACCAGTATGGCATGAATCTCTGGAAGTAGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCCCAAACAGATATAGCTGTAATGTTGAAGAATCACTGTTCAACTAATACTGCTGTAGATGGTCTAGAATTCAAAATTGATGAAATAGTACAAGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCAGAATGGAGTTCCATCATTTCGCTTGGAATCCTTATTTCGGAGGCGAGTTTCAAAAATTTATCATGCCTTGGAGCTTGCGTGA 2190 0.4068 MGKKKEQVGEKPSEDGGSQSKVGDSSPKAYDKDTMVFISMSQELKDEGNKLFQKRDLEGAMLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLGEYPRAIHECNLALEVTPKYCKALLKRARCYEGLNRLDLALRDVSTVLKMEPKNIMASEISERVKKALEEKGLRVNDTVIELPPDYVEPSYALPPEKVVKGKTHKKKSNKVEVKAADDKIVEKQAEEKLEEKRVENNIEEKAGKKCKKKKAKEKIDEKKDDVKEVVEEKINGRREHMTKKTAKLVFGEDIRWAELPVNCSLLQLREVICERFPSLGSVLVKYRDQEGDLVTITSDAELRWAETSAGSQGSIRLYIVEANPEQDPFFEKLNKKEAQTLGINKAPENGCVVKEKEMITSSCIEDWVIRFAQLFKNHVGFESDRYLNFHELGMKVYSEAMEETVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKEHLYEQIKSAYDWAQKEYAKAGEKYEAAIKMKSDFYEGFLALGQQQFEQAKLSWYYAISSGADLATWPSAEVLQHYNNAEDNMEKGMQIWEESEEQCLIKASKSKDVNLNLHNMGLDELFKNISSDEIAAQTANMRSQINLLWGTMLYERSIVEFKLGLPVWHESLEVAVEKFELAGASQTDIAVMLKNHCSTNTAVDGLEFKIDEIVQAWNEMYEAKKWQNGVPSFRLESLFRRRVSKIYHALELA 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1199 729 Coils Coil 216 262 - -
Glsi02g1199 729 SUPERFAMILY CAD & PB1 domains 272 363 - -
Glsi02g1199 729 CDD PB1 281 349 - -
Glsi02g1199 729 Gene3D Tetratricopeptide repeat domain 39 170 IPR011990 GO:0005515
Glsi02g1199 729 MobiDBLite consensus disorder prediction 1 29 - -
Glsi02g1199 729 ProSiteProfiles PB1 domain profile. 273 352 IPR000270 GO:0005515
Glsi02g1199 729 Gene3D - 266 352 - -
Glsi02g1199 729 SMART PB1_new 273 352 IPR000270 GO:0005515
Glsi02g1199 729 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Glsi02g1199 729 SUPERFAMILY TPR-like 42 532 IPR011990 GO:0005515
Glsi02g1199 729 PANTHER PROTEIN CLMP1 3 727 IPR044517 -
Glsi02g1199 729 SMART tpr_5 115 148 IPR019734 GO:0005515
Glsi02g1199 729 SMART tpr_5 41 74 IPR019734 GO:0005515
Glsi02g1199 729 SMART tpr_5 79 114 IPR019734 GO:0005515
Glsi02g1199 729 Pfam PB1 domain 275 351 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1199 Glsi-ChrGlsi02 8464339 8466606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1199 24 164 Calmodulin-binding Proteins AT3G25230 29.677 1.34e-07 53.1