Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1197 ATGTCGTCCGAGATCGAGGTCGTTGAGGAGGTCCAATCGCGGGATCAGCAATCGACGGCCTCTGCCGCTGGCCCCGGCGATGAATTTGGGGACGATAGTTTTCGGAACGATGTCTACACGGCAGCGGCTTATGGGGATTTGGAGAAGCTGCATAGATTGGTGGAGCAGGAGGGTTGCTCGGTTTCGGAGCCCGATGGGCTCGGATATTACGCCTTACAGTGGGCTGCACTTAACAATCGCACTGCCGCTGCTCAGTATATCATTGAGCATGGGGGAGATGTAAACGCCACGGATCATACTGGGCAGACAGCATTACATTGGAGTGCAGTTCGGGGTGCCATCCAAGTTGCAGAGCTTTTACTCCAAGAAGGTGCCCGAGTGAATGCTGCTGATATTTATGGGTATCAGACAACGCATGTTGCAGCCCAATATGGTCAGACGGCTTTCCTTTATCACATTGTTTCAAAATGGAATGCTGACCCTGATGTCCCTGATAATGATGGAAGAAGCCCCTTGCATTGGGCTGCTTACAAAGGTTTTGCTGATTGTATTCGTCTTCTGCTATTCCTAAATGCATATAGGGGGCGTCAAGACAAGGAGGGTTGCACTCCTCTTCATTGGGCTGCTATCAGGGGTAACTTGGAGGCATGTACTGTTTTAGTACAGGCTGGCAAGAAGGAAGACCTGATGGTGACTGATAATACTGGCGTTACACCAGCGCAGCTTGCTTCTGATAAGAATCATAGACAAGTTGCTTTTTTCCTTGGAAACACCAGAAGGTTGCTTGACAAACGCTGTGATGGGAACAGCCGCCTTGGAAAAATTTCCAAACTAGGACTTGCTCCTGTACTTTGGTGCATAATTTTTCTGCTCCTGATCACCTATATTCATTCCGTCATCTTGGCAACGAATCTGCCAAAATTAACGGCTGCTGCTGGCCTTCTTGCATGGTTTGGAGTTTTCCTTGCAACAACTGGACTGGTTATGTTTCACAGGTGTAGCAGCAAGGATCCAGGTTACATCAGAATGAATATGCATGACTCCGAGAATGTTAAAGATGATGAACCACTCTTAAAGATTGAGATAAATCATCCTGCTTTGCTAGCTGGAAATTGGTCCCAGCTTTGTGCAACATGCAAGATTGTCAGGCCTCTTCGCGCTAAGCACTGTTCTACCTGTAATCGTTGTGTGGAACAATTTGATCATCATTGTCCTTGGGTATCCAATTGCATCGGCAAGAAGAACAAATGGGATTTCTTTATTTTTCTTGTTCTTGAAGTTTCAGCAATGTTGATCACTGGTGGAGTTACTCTATCAAGAGTATTAACCGATCCATTTGCTCCTTCTTCATTTGGAGCATGGGTTGAATATGCTGGTACAAATCTTGTGGGGGCTATATCATTTCTAATTGTTGTTTTTTTCCTCTTCTTTGGTGTGTTCGTCTTGACAGTTGTTCAAGCTAGTCAGATATCACATAATGTTACAACAAATGAAATGGCAAATGCAATGCGATATAGCTACCTCAGAGGTCCAGGTGGTAGATTCAGAAATCCATATGACCATGGGATCAAGAAGAACTGTTCAGATTTCTTGATCAATGGATACAATGAAGATGTGGAGTCTATTGAAGAATTAGGTAATTCTGAGGGTATAGGTATGACGAACATTGCAAGGAACCCAAACTTTGCAAATGGAGACTCACATTCTCACTTAGGAAATGGCCATGTTGTTGTTAATGTGAATTCCAACAGCACCAACGCTAGTACACGTCACGCTCATGGTAATGGTCATGTTCATTCCTCGCATTGTAGCCATAATAACCATGACAAGACAAAAAATGACAGCATTCCATTGGGGTTAGGTCTTGGTCTTGGTCGGAATACCAAATCTGCTGCACCCTCGTCGTGA 1908 0.4497 MSSEIEVVEEVQSRDQQSTASAAGPGDEFGDDSFRNDVYTAAAYGDLEKLHRLVEQEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNATDHTGQTALHWSAVRGAIQVAELLLQEGARVNAADIYGYQTTHVAAQYGQTAFLYHIVSKWNADPDVPDNDGRSPLHWAAYKGFADCIRLLLFLNAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMVTDNTGVTPAQLASDKNHRQVAFFLGNTRRLLDKRCDGNSRLGKISKLGLAPVLWCIIFLLLITYIHSVILATNLPKLTAAAGLLAWFGVFLATTGLVMFHRCSSKDPGYIRMNMHDSENVKDDEPLLKIEINHPALLAGNWSQLCATCKIVRPLRAKHCSTCNRCVEQFDHHCPWVSNCIGKKNKWDFFIFLVLEVSAMLITGGVTLSRVLTDPFAPSSFGAWVEYAGTNLVGAISFLIVVFFLFFGVFVLTVVQASQISHNVTTNEMANAMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVESIEELGNSEGIGMTNIARNPNFANGDSHSHLGNGHVVVNVNSNSTNASTRHAHGNGHVHSSHCSHNNHDKTKNDSIPLGLGLGLGRNTKSAAPSS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1197 635 ProSiteProfiles Ankyrin repeat region circular profile. 100 131 - -
Glsi02g1197 635 FunFam S-acyltransferase 154 262 - -
Glsi02g1197 635 Pfam Ankyrin repeats (3 copies) 40 131 IPR002110 GO:0005515
Glsi02g1197 635 Pfam Ankyrin repeats (3 copies) 198 255 IPR002110 GO:0005515
Glsi02g1197 635 ProSiteProfiles Ankyrin repeat profile. 167 199 IPR002110 GO:0005515
Glsi02g1197 635 Gene3D - 32 153 IPR036770 -
Glsi02g1197 635 ProSiteProfiles Ankyrin repeat region circular profile. 167 188 - -
Glsi02g1197 635 SUPERFAMILY Ankyrin repeat 35 255 IPR036770 -
Glsi02g1197 635 MobiDBLite consensus disorder prediction 1 32 - -
Glsi02g1197 635 ProSiteProfiles Ankyrin repeat profile. 200 232 IPR002110 GO:0005515
Glsi02g1197 635 FunFam S-acyltransferase 26 153 - -
Glsi02g1197 635 Pfam DHHC palmitoyltransferase 374 501 IPR001594 GO:0016409
Glsi02g1197 635 Pfam Ankyrin repeats (many copies) 148 188 IPR002110 GO:0005515
Glsi02g1197 635 ProSiteProfiles Ankyrin repeat region circular profile. 200 224 - -
Glsi02g1197 635 ProSiteProfiles DHHC domain profile. 374 424 - -
Glsi02g1197 635 MobiDBLite consensus disorder prediction 585 635 - -
Glsi02g1197 635 ProSiteProfiles Ankyrin repeat profile. 67 99 IPR002110 GO:0005515
Glsi02g1197 635 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 12 540 - -
Glsi02g1197 635 SMART ANK_2a 167 199 IPR002110 GO:0005515
Glsi02g1197 635 SMART ANK_2a 33 63 IPR002110 GO:0005515
Glsi02g1197 635 SMART ANK_2a 67 96 IPR002110 GO:0005515
Glsi02g1197 635 SMART ANK_2a 100 129 IPR002110 GO:0005515
Glsi02g1197 635 SMART ANK_2a 200 231 IPR002110 GO:0005515
Glsi02g1197 635 SMART ANK_2a 235 264 IPR002110 GO:0005515
Glsi02g1197 635 ProSiteProfiles Ankyrin repeat profile. 100 132 IPR002110 GO:0005515
Glsi02g1197 635 Gene3D - 154 260 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1197 Glsi-ChrGlsi02 8446818 8455857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1197 41 220 Ion Channels AT2G25600 31.492 3.91e-11 64.3