Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1170 ATGTCCACGAGCCTCGCGAATGGAGACCCCGAGTCCCTCCTCCGCCAACCCTTAATTTCTCCTCAAAGATCTGTCGTTAACTCCACATCCCAGGTTGCCATCGTCGGCGCCAATGTCTGCCCCATTGAGAGCCTTGACTACGAGATTTTTGAGAACGAGTTCTTCAGGCAGGATTGGAGGAGCCGAGGAAAGGTTCAGATATTCCAGTACATATTTATGAAGTGGCTTTTGTGCTTCCTGATTGGTTTGATTGTTAGCTTAGTTGGTTTTTGCAATAATCTGGCGGTTGAGAATATCGCTGGCCTGAAGTTCGTGATCACATCTAATATGATGTTGGAGAGGAGGTTTCTGTTGGCCTTCCTAGTTTTTTTTGCTTCAAATTTGGGTCTCACGCTTTTTGCTTCTATAATCACGGCTTTTATAGCACCTGCTGCTGCGGGTTCTGGTATACCAGAGGTGAAGGCTTACCTAAATGGCGTAGATGCGCCCGGAATATTTACTCTGCGAACTCTGTTCATTAAGATCATTGGAAGCATTTCAGCAGTTTCATCATCCCTTCTTGTTGGAAAGGCAGGGCCCATGGTGCATACAGGTGCATGTGTGGCATCATTGTTGGGCCAGGGTGGATCCAAGAGATATGGATTAACATGGAAGTGGTTACGTTTTTTTAAGAACGATCGAGATCGACGGGATCTAGTAACATGTGGATCTGCAGCTGGAATTGCTGCTGCCTTCCGTGCCCCAGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAAGTACCCTTCTGTGGAGAGTTTTCTTCACAACTGCAATAGTTGCAATTGTGCTTCGTGCACTGATTGATGTTTGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGCGGGCTGATAATGTTTGATGTTTATTCTGCAAATATGTCATATCATCTGGCAGATTTGCCTCCTGTCTTCATTCTTGGAGTTGTAGGGGGAATACTTGGGAGCTTGTATAACTCTCTGTTGAGCAGAGTTCTCCGTGTATACAATATTATCAACGAGAAAGGTGTTGCTTATAAAATTTTGCTTGCTTGTTTAATCTCCATTTTTACTTCCTGTCTCCTTTTTGGATTGCCATGGTTTGCATCTTGCCGACCTTGTCCACTTCATGCAACTGAGGCTTGTCCTACAATAGGCCGTTCTGGTAACTACAAGAAATTCCAATGCCCTCCTGGTCAATACAATGATCTTGCCAGCCTCATTTTTAACACAAACGATGATGCTATCAAAAATCTATTTAGCAAGAACACAGATGAGGAGTTTCAGTATTCATCAATGCTCATTTTTTTCGTCACATGCTATTTTCTAAGCATCTTTAGCTATGGAATTGTTGCTCCCACTGGTCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGACGTTTTGTTGGGATGTTGGTTGGCGAAAATTCAAGTCTTAACCATGGCCTTTATGCTGTTCTGGGTGCTGCTTCCTTTCTTGGGGGGTCTATGAGGATGACAGTTTCCCTTTGTGTAATCATTCTAGAATTAACCAATAATTTGTTATTGCTACCCTTAATAATGCTGGTGCTTTTGGTATCAAAGACTGTAGCAGATGCTTTCAATGCAAATATATACGACCTTATCATGAAAGCCAAGGGGTTCCCATATTTAGAAACTCATGCTGAGCCTTATATGAGGCAGTTAACAGTAGGTGATGTAGTCACGGGCCCACTTCAGTTCTTTAATGGCATTGAGAAAGTTCGTAACATTGTGTTTGTTCTCAAAACTTCTAGGCACAATGGGTTCCCTGTAATTGATGAGCCTCCAATTTTTGAAGCTCCAATTTTATTTGGTGTGATCCTTCGTGCCCATCTTCTCGTGTTGTTGAAGAAGAAAGCTTTCTGCTCCACACCAATGGCAATAGGAAATGATGCCTTAAATCAATTTTCTGCAGATGACTTTGCAAAGAGGGGTTCAGGAAACGGTGACAAGATAGAGAATATACAGTTAACTGAGGAAGAGATGGACATGTTCATAGATCTGCATCCATTTACTAACGCTTCACCTTATACTGTTGTAGAGACAATGTCACTGGGAAAGGCCCTTACCCTTTTTCGAGATGTTGGTTTAAGGCACCTGTTGGTGATACCCAAGATCTCTAGTAGATCACCCGTGGTGGGTATACTGACAAGGCACGATTTTATGCCAGAACACATATTGGGGTTGCATCCTTCGCTGGCCAGAAGCAGGTGGAAGAGATTAAGATTCGAGCTCCCCTCTCTGATCAAAACATTTTAG 2319 0.4312 MSTSLANGDPESLLRQPLISPQRSVVNSTSQVAIVGANVCPIESLDYEIFENEFFRQDWRSRGKVQIFQYIFMKWLLCFLIGLIVSLVGFCNNLAVENIAGLKFVITSNMMLERRFLLAFLVFFASNLGLTLFASIITAFIAPAAAGSGIPEVKAYLNGVDAPGIFTLRTLFIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLVTCGSAAGIAAAFRAPVGGVLFALEEMASWWRSTLLWRVFFTTAIVAIVLRALIDVCLSGKCGLFGKGGLIMFDVYSANMSYHLADLPPVFILGVVGGILGSLYNSLLSRVLRVYNIINEKGVAYKILLACLISIFTSCLLFGLPWFASCRPCPLHATEACPTIGRSGNYKKFQCPPGQYNDLASLIFNTNDDAIKNLFSKNTDEEFQYSSMLIFFVTCYFLSIFSYGIVAPTGLFVPVIVTGASYGRFVGMLVGENSSLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPLIMLVLLVSKTVADAFNANIYDLIMKAKGFPYLETHAEPYMRQLTVGDVVTGPLQFFNGIEKVRNIVFVLKTSRHNGFPVIDEPPIFEAPILFGVILRAHLLVLLKKKAFCSTPMAIGNDALNQFSADDFAKRGSGNGDKIENIQLTEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRDVGLRHLLVIPKISSRSPVVGILTRHDFMPEHILGLHPSLARSRWKRLRFELPSLIKTF 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1170 772 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 748 - -
Glsi02g1170 772 PRINTS Plant CLC chloride channel signature 415 431 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi02g1170 772 PRINTS Plant CLC chloride channel signature 291 298 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi02g1170 772 PRINTS Plant CLC chloride channel signature 259 267 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi02g1170 772 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi02g1170 772 PRINTS Plant CLC chloride channel signature 273 283 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi02g1170 772 CDD ClC_6_like 43 564 - -
Glsi02g1170 772 ProSiteProfiles CBS domain profile. 691 752 IPR000644 -
Glsi02g1170 772 PRINTS Chloride channel signature 174 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 PRINTS Chloride channel signature 513 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 PRINTS Chloride channel signature 143 160 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 PRINTS Chloride channel signature 551 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 PRINTS Chloride channel signature 495 511 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 SUPERFAMILY CBS-domain pair 567 742 IPR046342 -
Glsi02g1170 772 Pfam CBS domain 695 741 IPR000644 -
Glsi02g1170 772 FunFam Chloride channel ClC3 66 383 - -
Glsi02g1170 772 CDD CBS_pair_voltage-gated_CLC_euk_bac 567 744 - -
Glsi02g1170 772 Gene3D Clc chloride channel 66 565 - -
Glsi02g1170 772 Pfam Voltage gated chloride channel 131 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi02g1170 772 Gene3D - 566 742 IPR046342 -
Glsi02g1170 772 SUPERFAMILY Clc chloride channel 51 566 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1170 Glsi-ChrGlsi02 8256870 8261997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1170 5 766 Ion Channels AT5G33280 78.346 0.0 1208