Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1169 ATGGCGATCACCGCATTACTTTTTATGCTATTACTGCAGTTGCCAAGAAATTTTGGCTCTGGTGTTTTCTTACAGTCAAAGGACTGTGGTGCGAATCGGGTTGCCTGTTTATATTCTCATGGTCAAGAACTATTTTACATAAACGAGAATGCAGTAGACAAAGTTACTTTCTGTAAGACCCTACAATTGTATATTGCAAATGGATGCGACGTGAAGGACTACTTTGGAAGTAACAACTGTGCGTTGGATGTTTCTTTGGTTAATTTACGTTCCAATGCAGGAAGAAAGCTTTTGCAGAAGGATTTAAGCATTAAATCAACATCCCCAGGCCACAAAATTGTTTCTAAGCCTCTGTCAACCCCGAAAGTTGGTATAGTTGCAAGTGGAGTTTTGTTTGTATGCTGTGCCTGTCTTTGTCCCTGTTTTTATGGGAAGAGACGAAAAGCCACTTCTCATGCTGTTCTGTCCAAGGATCCAAATTCAATGGATTCAGCTTCCTCCTTTGACGTGAACAACTCTGTTTCTGAAAAGATCCCTGCCAGTCCATTTCGGGTACCACCTAGTCCTTCAAGATTCTCAATGTCTCCAAAACTCACTAGACTTGGATCATTACATCTCAACCTGAGTCAGATTGCAAAAGCCACCCGTAATTTCTCAGGTACATTCCAAATAGGAGAAGGAGGATTTGGAACTGTCTACAAGGCTCAGCTAGAAGATGGCCATGTTGTGGCTGTAAAACGTGCAAAAAGGGAACATTTTGAGAGTTTGAGAACTGAATTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGAAACCTAGTGAAGTTACTAGGTTATATTGACCAAGGAAATGAACGTGTTCTCATTACAGAGTATGTCCGAAATGGTACTCTTAGAGAACATTTGGATGGTCTGCGGGGAAAGATCCTTGACTTCAATCAGCGCCTTGAAATTGCCATAGATGTTGCTCATGGCTTGACCTATCTACATCTCTATGCAGAAAAGCCAATTATCCATCGAGATGTGAAATCATCCAACATTCTTCTAACAGAAAGCATGAGAGCGAAAGTTGCTGATTTTGGATTTGCAAGGCTTGGTCCAATGGACTCTGATCAAACACACATCTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGACCCTGAGTACATGAAAACATATCAGCTCACTCCCAGAAGTGATGTTTATTCATTTGGTATTTTGCTTTTAGAAATTGTGACAGGCCGCCGTCCTGTGGAGTTGAAGAAACCTGCTGATGAGCGGGTTACACTGAGATGGGCTTTCAGAAAGTATGATGAAGGAAATGTGGGGGAATTAGTGGATCCTTTAATGGATGAGTCTGTGAATGAAGAGGTTCTCATGAAAATGTTTGGTTTAGCAATTCAATGTGCAGCACCAATTCGAACGGATCGGCCTGACATGAAATCGGTGGGAGAGCAGTTGTGGACGATAAGGGCAGAGTACCTTAAAGTTCAAAGAGACATTAATAATATCTTGAAACTCTGTATGGTTGCACACTGTTCTGTTCGTTCAACCAAGGAAATGCTTGTTCCAGAAGGCCTAGATATACTAATCCAACTCTTCCAACTTCCTACAGATGTTTTGAAACTCAATATACATGGAAATTCCAATCCAATTATAACTAAAGTTCAATAA 1683 0.4094 MAITALLFMLLLQLPRNFGSGVFLQSKDCGANRVACLYSHGQELFYINENAVDKVTFCKTLQLYIANGCDVKDYFGSNNCALDVSLVNLRSNAGRKLLQKDLSIKSTSPGHKIVSKPLSTPKVGIVASGVLFVCCACLCPCFYGKRRKATSHAVLSKDPNSMDSASSFDVNNSVSEKIPASPFRVPPSPSRFSMSPKLTRLGSLHLNLSQIAKATRNFSGTFQIGEGGFGTVYKAQLEDGHVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIDQGNERVLITEYVRNGTLREHLDGLRGKILDFNQRLEIAIDVAHGLTYLHLYAEKPIIHRDVKSSNILLTESMRAKVADFGFARLGPMDSDQTHISTKVKGTVGYLDPEYMKTYQLTPRSDVYSFGILLLEIVTGRRPVELKKPADERVTLRWAFRKYDEGNVGELVDPLMDESVNEEVLMKMFGLAIQCAAPIRTDRPDMKSVGEQLWTIRAEYLKVQRDINNILKLCMVAHCSVRSTKEMLVPEGLDILIQLFQLPTDVLKLNIHGNSNPIITKVQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1169 560 Gene3D Transferase(Phosphotransferase) domain 1 295 514 - -
Glsi02g1169 560 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 190 294 - -
Glsi02g1169 560 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 90 496 - -
Glsi02g1169 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Glsi02g1169 560 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 295 504 - -
Glsi02g1169 560 Gene3D Phosphorylase Kinase; domain 1 190 294 - -
Glsi02g1169 560 ProSiteProfiles Protein kinase domain profile. 218 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1169 560 Pfam Protein tyrosine and serine/threonine kinase 223 489 IPR001245 GO:0004672|GO:0006468
Glsi02g1169 560 SUPERFAMILY Protein kinase-like (PK-like) 200 493 IPR011009 -
Glsi02g1169 560 SMART serkin_6 218 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g1169 560 ProSitePatterns Protein kinases ATP-binding region signature. 224 246 IPR017441 GO:0005524
Glsi02g1169 560 CDD STKc_IRAK 224 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1169 Glsi-ChrGlsi02 8250048 8256422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1169 190 504 Receptor kinase-like Gene Family AT3G46290 42.633 5.38e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Glsi02g1169 PK_Tyr_Ser-Thr 2.2e-49 CL0016