Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g1143 ATGATTGGGGGTTTGCTTTCACTTTGCAGTGGAATAACAACAGGTGGAATATTAGAATATCGTCGTGGACATAGCGAGAAAGACAGAAGAATCTCAATCTCATTAGGCCCTCCTGAAAAACATGCATGCCAGCTTCAAAGTTACTTCAAAGTTATAAAACCCAATGCTGTTGAGGCTATTAGCAAAATCAAGTGGTATCAGATACAAGGGGAACTTGCCATTTTCTTCCTCTCAATTCAAGAAACCAAGTCATCACTCATCACTATGGAAAGTGAAGGACTGGTGAAGCCTCAGACCAAAAAGAGTTTATGGAAGCCGGAGGAAGACTTGATTCTTAAAACCTACATTGAAACTCATGGCGAAGGCAACTGGGCTGCTGTGTCCAAAAATTCAGGACTGAGGAGAGGAGGGAAGAGTTGCAGGCTAAGATGGAAAAATTATTTGAGACCTGATATTAAACGTGGAGGTATGTCAAAAGAGGAAGAAGACCTTATTATCAGACTTCATAAGCTTCTTGGAAACAGATGGTCATTGATAGCTGGACGGCTTCCCGGTAGAACCGATAATGAAGTGAAAAACTACTGGAATGCCCGTATGAGCAAAAGATGCCGTCGACGCAAAGACAAAACCATTCACCAAGAAAGCAATAAGAAAATCAGGCCCTCTAATTCTGAGGACACTTCTTGCCTTCCAAGTTCAACAACCCCTGCAGAAGCAGGGTTAGATGTGACAAAAGAAGGGAAAGAACAGAGCAGTGACTTGGCTATCTCTTGGATCGACGAAACACAAAGTTTTGACTGTAACCTGGACATTCCAATAGTGCCCGGAAATAGTGCTATGTTTGGTTTTGATGATGAGCCTTTCATGACCGATTGGGATTCTTTTGTCTTCTTTGAAGCAGAAGCATTAGGTTGTGGAGGGTTGGAGTACAATTCGCACATGCAATGGATCATGCCATAG 960 0.425 MIGGLLSLCSGITTGGILEYRRGHSEKDRRISISLGPPEKHACQLQSYFKVIKPNAVEAISKIKWYQIQGELAIFFLSIQETKSSLITMESEGLVKPQTKKSLWKPEEDLILKTYIETHGEGNWAAVSKNSGLRRGGKSCRLRWKNYLRPDIKRGGMSKEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEVKNYWNARMSKRCRRRKDKTIHQESNKKIRPSNSEDTSCLPSSTTPAEAGLDVTKEGKEQSSDLAISWIDETQSFDCNLDIPIVPGNSAMFGFDDEPFMTDWDSFVFFEAEALGCGGLEYNSHMQWIMP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g1143 319 SMART sant 100 150 IPR001005 -
Glsi02g1143 319 SMART sant 153 201 IPR001005 -
Glsi02g1143 319 Gene3D - 157 227 - -
Glsi02g1143 319 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 90 240 - -
Glsi02g1143 319 CDD SANT 104 148 IPR001005 -
Glsi02g1143 319 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Glsi02g1143 319 Gene3D - 101 153 - -
Glsi02g1143 319 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Glsi02g1143 319 MobiDBLite consensus disorder prediction 222 239 - -
Glsi02g1143 319 MobiDBLite consensus disorder prediction 204 245 - -
Glsi02g1143 319 CDD SANT 157 196 IPR001005 -
Glsi02g1143 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 148 IPR017930 -
Glsi02g1143 319 FunFam MYB-related transcription factor 100 153 - -
Glsi02g1143 319 SUPERFAMILY Homeodomain-like 99 195 IPR009057 -
Glsi02g1143 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 203 IPR017930 -
Glsi02g1143 319 Pfam Myb-like DNA-binding domain 154 196 IPR001005 -
Glsi02g1143 319 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g1143 Glsi-ChrGlsi02 7945630 7948758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g1143 96 281 MYB Transcription Factor Family AT5G52600 50.259 3.50e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g1143 Myb_DNA-binding 3.1e-12 CL0123